| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,526,125 – 22,526,228 |
| Length | 103 |
| Max. P | 0.581761 |
| Location | 22,526,125 – 22,526,228 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 80.60 |
| Mean single sequence MFE | -42.29 |
| Consensus MFE | -26.12 |
| Energy contribution | -27.82 |
| Covariance contribution | 1.70 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22526125 103 + 27905053 GGGAAAAGGCGAGGA--UUACUCACUUGGCCUCCAAGGCCAGGGCAAAGACGCCCGCUGCUUCGGGCGCCGCCGCACUGGUGCCCGAGUGGGUGGUCGUGCACUU .....((((((..((--((((((((.(((((.....)))))((((......))))......((((((((((......)))))))))))))))))))).))).))) ( -52.70) >DroVir_CAF1 254129 97 + 1 ----GAA--CGCCCA--GUACUCACUUUGCCUCCAAGGCCAGCGCAAAGACGCCAGCUGCCUCGGGUGCCGCGGCGCUGGUGCCCGAAUGGGUGGUCGUACAUUU ----((.--((((((--....((.((((((((........)).)))))).(((((((.(((.(((...))).))))))))))...)).)))))).))........ ( -39.90) >DroEre_CAF1 161985 94 + 1 ---------CGAGGA--UUACUCACUUGGCCUCCAAGGCCAGGGCAAAGACGCCCGCUGCUUCGGGCGCCGCCGCACUGGUGCCCGAGUGGGUGGUCGUGCACUU ---------.(((..--...))).(((((((.....)))))))(((....(((((((....((((((((((......)))))))))))))))))....))).... ( -50.90) >DroWil_CAF1 177573 97 + 1 ----CA--AUGAGGA--CAACUCACUUUGCCUCCAGGGCCAGAGCAAAGACGCCUGCUGCUUCGGGCGCCGCAGCGCUGGUGCCAGAGUGCGUGGUCGUGCAUUU ----.(--((((.((--(.((.(((((((((....))(((((.((...(.((((((......)))))).)...)).)))))..))))))).)).))).).)))). ( -37.20) >DroMoj_CAF1 267054 97 + 1 ----CAC--CUCCCA--AUACUCACUUCGCUUCCAAUGCCAAUGCAAAGACGCCAGCUGCCUCAGGUGCCGCGGCGCUGGUGCCCGAAUGGGUCGUGGUGCACUU ----(((--(.((((--.......(((.((.............)).))).(((((((.(((...(....)..))))))))))......))))....))))..... ( -30.02) >DroPer_CAF1 186224 100 + 1 ----GCAGGG-GGGACUCUACUCACUUUGCCUCCAAGGCCAAAGCAAAGACGCCCGCUGCUUCGGGCGCCGCCGCACUGGUGCCCGAGUGAGUGGUCGUACACUU ----((((.(-((...(((.....(((((((.....)).)))))...)))..))).))))(((((((((((......))))))))))).(((((......))))) ( -43.00) >consensus ____CAA__CGAGGA__CUACUCACUUUGCCUCCAAGGCCAGAGCAAAGACGCCCGCUGCUUCGGGCGCCGCCGCACUGGUGCCCGAGUGGGUGGUCGUGCACUU ............................(((.....)))....(((....(((((((....((((((((((......)))))))))))))))))....))).... (-26.12 = -27.82 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:37 2006