| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,525,827 – 22,525,923 |
| Length | 96 |
| Max. P | 0.844389 |
| Location | 22,525,827 – 22,525,923 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 78.03 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -18.19 |
| Energy contribution | -18.63 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.844389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22525827 96 - 27905053 AACCCACCC-UUCUUU----------GGCAGUCCUCAGCUGACUUGGCGGGACAUACAGCAUCUGACGGUGCUGACAUCGAAGCGCAACUCGCUGUUCGAUGCCAAG .........-....((----------(((.(((((..(((.....))))))))...(((((((....)))))))..(((((((((.....))))..)))))))))). ( -33.90) >DroVir_CAF1 253998 91 - 1 CA---AU---UUGGCA----------AACAGCCCUCAACUGACUUGGCGCGACAUCCAGCAUCUGACUGUGCUAACAUCGAAGCGCAAUUCCCUGUUCGAUGCCAAG ..---..---..(((.----------....))).........((((((((((((..(((...)))..((((((........))))))......)).))).))))))) ( -23.40) >DroPse_CAF1 185386 104 - 1 ACUCCAC---UUCGUUAUCCCACGUCCAAAGCCCACAACUCACUUGGCGCGACAUCCAGCAUCUGACGGUGCUGACAUCGAAGCGCAACUCUCUGUUCGAUGCCAAG .......---................................((((((........(((((((....)))))))..(((((...(((......)))))))))))))) ( -23.50) >DroGri_CAF1 211129 94 - 1 AAU--AC---UUGGCAA--------CAACAGUCCGCAGCUGACUUGGCGAGACAUUCAGCAUCUGACUGUGCUGACAUCAAAGCGUAAUUCGCUGUUCGAUGCCAAG ...--.(---((((((.--------((((.((((((..........))).)))..(((((((......)))))))......((((.....))))))).).))))))) ( -30.70) >DroMoj_CAF1 266923 91 - 1 CC---AU---UUGGCC----------AACAGCCCUCAGCUCACUUGGCGCGACAUACAGCAUCUGACUGUGCUGACAUCGAAACGCAAUUCCCUUUUCGAUGCCAAG ..---..---..(((.----------....))).........((((((........((((((......))))))..(((((((.(.......).))))))))))))) ( -23.90) >DroAna_CAF1 169922 97 - 1 AUGCCACAAUUUAUUU----------UGCAGUCCGCAGCUUACUUGGCGCGAUAUCCAGCAUCUGACGGUGCUGACAUCAAAACGCAACUCUCUGUUCGAUGCCAAG ...............(----------(((.....))))....(((((((.(((...(((((((....)))))))..)))....((.(((.....))))).))))))) ( -24.60) >consensus AA___AC___UUGGCU__________AACAGCCCUCAGCUGACUUGGCGCGACAUCCAGCAUCUGACGGUGCUGACAUCGAAGCGCAACUCCCUGUUCGAUGCCAAG ..........................................((((((........((((((......))))))..(((((.(((........)))))))))))))) (-18.19 = -18.63 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:36 2006