Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,520,607 – 22,520,697 |
Length | 90 |
Max. P | 0.917286 |
Location | 22,520,607 – 22,520,697 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 77.67 |
Mean single sequence MFE | -23.75 |
Consensus MFE | -15.87 |
Energy contribution | -15.90 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.06 |
Mean z-score | -1.81 |
Structure conservation index | 0.67 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22520607 90 + 27905053 ACAAUAUCCAUUUAUGCGCAUAAUGAGGAGUCAUACAUCAGGGAUGACC-------ACAGCUGCCGACGGCUGCUCAUCA---------UCCUCAGUCUCAUCCAA---------- ......................(((((((........)).(((((((..-------.((((((....))))))....)))---------))))....)))))....---------- ( -20.50) >DroPse_CAF1 179714 85 + 1 ACAAUACCCAUUUAUGCACAUAAUGAGGAGUCAUCCAUCAGGGAUGACUACGAGGUACAGCUGCCGACGGCUGCUCAUCA---------G------------GCAG---------- ..............(((...(.(((((.((((((((.....))))))))........((((((....))))))))))).)---------.------------))).---------- ( -27.30) >DroEre_CAF1 156380 90 + 1 ACAAUAUCCAUUUAUGCGCAUAAUGAGCAGUCAUACAUCAGGGAUGACU-------ACAGCUGCCGACGGCUGCUCAUCA---------UCCCCACUUUCAUCCAA---------- ..............(((.(.....).)))...........(((((((..-------.((((((....))))))....)))---------)))).............---------- ( -21.20) >DroYak_CAF1 154704 90 + 1 ACAAUAUCCAUUUAUGCGCAUAAUGAGUAGUCAUACAUCAGGGAUGGCU-------ACAGCUGCCGACGGCUGCUCAUCA---------UCCCCAGUCUCAUCCAA---------- .......................((((((....))).)))(((((((..-------.((((((....))))))....)))---------)))).............---------- ( -20.30) >DroAna_CAF1 164621 109 + 1 ACAAUACCCAUUUAUGCGCAUAAUGAGGAGUCAUACAUCAGGGAUGACU-------ACAGCUGCCGACGGCUGCUCAUCAGCAUCCGUAUCCGCAUCCUCAUCCAUACCACCGCCC ...............(((....((((((((((((.(.....).))))).-------.....(((..((((.((((....)))).))))....)))))))))).........))).. ( -25.92) >DroPer_CAF1 180385 85 + 1 ACAAUACCCAUUUAUGCACAUAAUGAGGAGUCAUCCAUCAGGGAUGACUACGAGGUACAGCUGCCGACGGCUGCUCAUCA---------G------------GCAG---------- ..............(((...(.(((((.((((((((.....))))))))........((((((....))))))))))).)---------.------------))).---------- ( -27.30) >consensus ACAAUACCCAUUUAUGCGCAUAAUGAGGAGUCAUACAUCAGGGAUGACU_______ACAGCUGCCGACGGCUGCUCAUCA_________UCC_CA_UCUCAUCCAA__________ ......................(((((.((((((.(.....).))))))........((((((....)))))))))))...................................... (-15.87 = -15.90 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:35 2006