Locus 8444

Sequence ID 3R_DroMel_CAF1
Location 22,514,321 – 22,514,414
Length 93
Max. P 0.580629
window13592

overview

Window 2

Location 22,514,321 – 22,514,414
Length 93
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 80.64
Mean single sequence MFE -20.47
Consensus MFE -16.13
Energy contribution -16.18
Covariance contribution 0.06
Combinations/Pair 1.13
Mean z-score -1.16
Structure conservation index 0.79
SVM decision value 0.09
SVM RNA-class probability 0.580629
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22514321 93 - 27905053
ACGCUGCGUUAUUGAAAUCGCCCAAGCAGCAAAAGUGUUUGAGUGCACUCAAGCGAACACCUGCACUCGCAUUCGAAUUCGCAUUCACAUUCG---
....((((...(((((...((....((((......((((((((....)))))))).....))))....)).)))))...))))..........--- ( -23.00)
>DroPse_CAF1 173811 82 - 1
ACGCUGCGUUAUUGAAAUCGCCCGAGCAGCAAAAGUGUUUCAGUGCACUCAAGCGAACACCUCCACC--------------CAUUCACACUGCUCC
.....(((..........)))..((((((....(((((......)))))...(.(((..........--------------..))).).)))))). ( -14.30)
>DroSec_CAF1 146976 87 - 1
ACGCUGCGUUAUUGAAAUCGCCCAAGCAGCAAAAGUGUUUGAGUGCACUCAAGCGAACACCUACACUCGCACA------CGCAUUCACAUUCG---
..(((((.....((....)).....)))))....(((((((((....)))))((((..........)))))))------).............--- ( -20.90)
>DroYak_CAF1 148309 87 - 1
ACGCUGCGUUAUUGAAAUCGCCCAAGCAGCAAAAGCGUUUGGGUGCACUCAAGCGAGCACUUGCACUCGUAUU------CGCAUUCACAUUCG---
....((((...((((...(((((((((.((....)))))))))))...))))(((((........)))))...------))))..........--- ( -27.40)
>DroAna_CAF1 158799 75 - 1
CCGCUGCGUUAUUGAAAUCGUCGAGGCAGCAAAAGUGUUUGAGUGCACUCAAGCGAACACUCGCACU------------------CACAUUCG---
..(((((.((..((....))..)).)))))....(((.(((((....)))))((((....))))...------------------))).....--- ( -23.10)
>DroPer_CAF1 174430 82 - 1
ACGCUGCGUUAUUGAAAUCGCCCGAGCAGCAAAAGUGUUUCAGUGCACUCAAGCGAGCACCUCCACC--------------CAUUCACACUCCUCC
..(((((.....((....)).....)))))....(((.....((((.(......).))))...))).--------------............... ( -14.10)
>consensus
ACGCUGCGUUAUUGAAAUCGCCCAAGCAGCAAAAGUGUUUGAGUGCACUCAAGCGAACACCUGCACU______________CAUUCACAUUCG___
..(((((.....((....)).....))))).....((((((((....))))))))......................................... (-16.13 = -16.18 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:35 2006