Locus 8443

Sequence ID 3R_DroMel_CAF1
Location 22,511,882 – 22,511,992
Length 110
Max. P 0.537361
window13591

overview

Window 1

Location 22,511,882 – 22,511,992
Length 110
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 87.51
Mean single sequence MFE -29.28
Consensus MFE -20.12
Energy contribution -21.36
Covariance contribution 1.24
Combinations/Pair 1.15
Mean z-score -1.81
Structure conservation index 0.69
SVM decision value 0.01
SVM RNA-class probability 0.537361
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22511882 110 - 27905053
CUAAUGUCGAACCAUGUAUUACGAGC--CAUGGCUUUACUACGCCAU-ACGACUUAAUUCAUGUGGCGUGCUUAGUGAAACUU-UUUGGCACAUGUCUUAUAAAUAAGACUGAA
....(((((((....((.((((((((--....))))...((((((((-(.((......)).)))))))))....)))).))..-)))))))((.((((((....)))))))).. ( -31.90)
>DroSec_CAF1 144570 109 - 1
CUAAUGUCGAACCAAGUAUCACGAGC---AGGGCUUUACUACGCCAU-ACGACUUAAUUCAUGUGGCGUGCUUAAUGAAACUU-UUUGGCACAUGGCUUAUAAAUAAGACUGAA
....(((((((..((((.(((.((((---.((......))(((((((-(.((......)).))))))))))))..))).))))-)))))))...((((((....)))).))... ( -27.30)
>DroSim_CAF1 143047 109 - 1
CUAAUGUCGAACCAAGUAUCACGAGC---AGGGCUUUACUACGCCAU-ACGACUUAAUUCAUGUGGCGUGCUUAGUGAAACUU-UUUGGCACAUGGCUUAUAAAUAAGACUGAA
....(((((((..((((.((((((((---.((......))(((((((-(.((......)).)))))))))))).)))).))))-)))))))...((((((....)))).))... ( -30.90)
>DroEre_CAF1 147658 98 - 1
CUAACGUCGAAGCAAGUAUCACGAGC---AGGGCUCUAUUACGCUAU-ACGGCUUAAUUCAUGUGGCGUGCU------------UUUGGCACAUGGCUUAGAAAUAGGACUGAA
.....((((((((.........((((---...))))....(((((((-(.((......)).)))))))))).------------))))))....((((((....)))).))... ( -24.80)
>DroYak_CAF1 145799 114 - 1
CUAAUGUCGAACCAAGUAUCACGAGCAGCAGGGCUUUAUUACGCCAGAACGACUUAAUUCAUGUGGCGUGCUUAGUGAAACUUUUUUGGCACAUGGCUUAUGUAUAAGUCUGUA
.....((((((..((((.(((((((((((...))).....((((((.(..((......)).).)))))))))).)))).)))).))))))(((.((((((....))))))))). ( -31.50)
>consensus
CUAAUGUCGAACCAAGUAUCACGAGC___AGGGCUUUACUACGCCAU_ACGACUUAAUUCAUGUGGCGUGCUUAGUGAAACUU_UUUGGCACAUGGCUUAUAAAUAAGACUGAA
.....((((((...(((.((((((((......))))...((((((((...((......))..))))))))....)))).)))..)))))).((.(.((((....)))).))).. (-20.12 = -21.36 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:34 2006