| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,511,685 – 22,511,793 |
| Length | 108 |
| Max. P | 0.991844 |
| Location | 22,511,685 – 22,511,793 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 88.84 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -23.98 |
| Energy contribution | -24.42 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.87 |
| SVM decision value | 2.29 |
| SVM RNA-class probability | 0.991844 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22511685 108 - 27905053 A-AACCAA--------CUAUACUAAUGUGGACAAGUAUUUUUUGCUUGUCUUG--CCCCCAGUGACCCAUUGUCACGCACAGGCAAAUAAUAACAGGCUGUAUAAUAAAGCCCGCUGGC .-..(((.--------(........(((.((((((((.....))))))))(((--((....(((((.....))))).....)))))......)))((((.........)))).).))). ( -30.00) >DroSec_CAF1 144359 118 - 1 A-AACCAACUGUACAACUAUACUAAUGUGGACAAGUAUUUUUUGCUUGUCUUGUCCCCCCAGUGACCCAUUGUCACGCACAGGCAAAUAAUAACAGGCUGUAUAAUAAAGCCCGAUGGC .-..(((.((((.(..............(((((((((.....)))))))))..........(((((.....)))))).))))...........(.((((.........)))).).))). ( -28.40) >DroSim_CAF1 142836 118 - 1 A-AACCAACUAUACAACUAUACUAAUGUGGACAAGUAUUUUUUGCUUGUCUUGUCCCCCCAGAGACCCAUUGUCACGCACAGGCAAAUAAUAACAGGCUGUAUAAUAAAGCCCGCUGGC .-..........................(((((((((.....))))))))).......((((.(.....(((((.......))))).........((((.........))))).)))). ( -23.70) >DroEre_CAF1 147465 108 - 1 A-AACUAA--------CUGUACUAAUGUGGACAAGUAUUUUUUGCUUGUCUAUU--CCCCAGUGACCCGUUGUCACGCACAGGCAAAUAAUAACAGGCUGAAUAAUAAAGCCCGCUGGC .-......--------..........(((((((((((.....))))))))))).--..((((((.....(((((.......))))).........((((.........)))))))))). ( -29.80) >DroYak_CAF1 145605 109 - 1 AAAACUAA--------CUAUACAAAUGUGGACAAGUAUUUUUUGCUUGUCUAUU--CCCCAGUGACCCAUUGUCACGCACAGGCAAAUAAUAACAGGCUGAAUACAAAAACUCGCUGGC ........--------..........(((((((((((.....))))))))))).--..(((((((....((((......(((.(...........).)))...))))....))))))). ( -25.60) >consensus A_AACCAA________CUAUACUAAUGUGGACAAGUAUUUUUUGCUUGUCUUGU_CCCCCAGUGACCCAUUGUCACGCACAGGCAAAUAAUAACAGGCUGUAUAAUAAAGCCCGCUGGC ............................(((((((((.....))))))))).......((((((.....(((((.......))))).........((((.........)))))))))). (-23.98 = -24.42 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:33 2006