Locus 8441

Sequence ID 3R_DroMel_CAF1
Location 22,511,497 – 22,511,600
Length 103
Max. P 0.847924
window13589

overview

Window 9

Location 22,511,497 – 22,511,600
Length 103
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 76.74
Mean single sequence MFE -32.46
Consensus MFE -21.06
Energy contribution -21.14
Covariance contribution 0.08
Combinations/Pair 1.13
Mean z-score -1.78
Structure conservation index 0.65
SVM decision value 0.78
SVM RNA-class probability 0.847924
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22511497 103 - 27905053
UCUUGGUCGUGUAAAAAUAAUUGCGGCUGGCUGCUCAAUUUGCAGCAGUCCGGUUGGCGUGGGAGCACGAGCACCACC------AUGUCCAACGCCCU-UCAGCCACA--CC
....(((.((((((......))))((((((((((.......)))))......((((((((((..((....))....))------))).))))).....-.))))))))--)) ( -36.80)
>DroSec_CAF1 144176 98 - 1
UCUUGGCCGUGUAAAAAUAAUUGCGGCUGGCUGCUCAAUUUGCAGCAGUCCUGUUGGCGUGGGUG------CACCACC------AUAUCCAACGCCCUUUUAGCCACA--CC
...((((...((((......))))(((.((((((((.....).)))))))..(((((....((((------...))))------....))))))))......))))..--.. ( -31.30)
>DroSim_CAF1 142653 98 - 1
UCUUGACCGAGUAAAAAUAAUUGCGGCUGGCUGCUCAAUUUGCAGCAGUCCGGUUGGCGUGGGUG------CACCACC------AUAUCCAACGCCCUUUUAGCCACA--CC
....(((((.((((......))))(((((.((((.......))))))))))))))((((((((((------.......------.))))).)))))............--.. ( -32.30)
>DroEre_CAF1 147278 102 - 1
UCGAGGCCGUGUAAAAAUAAUUGCGGCUGGCUGCUCAAUUUGCAGCUGGCUGGUUGGAGUGGUGG------CACCACUAUACUCGUAUCCAACGCCAU--CAGCCACA--CC
..(((((................((((..(((((.......)))))..))))((((((((((((.------...)))))).......))))))))).)--).......--.. ( -38.71)
>DroYak_CAF1 145438 82 - 1
UCUUGGCCGUGUAAAAAUAAUUGCGGCCGGUUGCUCAAUUUGCUGCAGGCUGGUUG----------------------------GUAUCCAACGCCAU--CGCCCCCCUUUC
....(((((((..........)))))))((((((..........)))(((..((((----------------------------(...))))))))..--.)))........ ( -23.20)
>consensus
UCUUGGCCGUGUAAAAAUAAUUGCGGCUGGCUGCUCAAUUUGCAGCAGUCCGGUUGGCGUGGGUG______CACCACC______AUAUCCAACGCCCU_UCAGCCACA__CC
..........((((......))))((((((((((.......)))))......(((((.((((...........))))...........))))).......)))))....... (-21.06 = -21.14 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:32 2006