| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,507,824 – 22,507,914 |
| Length | 90 |
| Max. P | 0.736797 |
| Location | 22,507,824 – 22,507,914 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 76.13 |
| Mean single sequence MFE | -30.60 |
| Consensus MFE | -18.55 |
| Energy contribution | -18.72 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.736797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22507824 90 + 27905053 CCGAGCCAAGCACGUAGAGAGAAUGGGA--------------GAGAGAGAGAAAGAGCGAAAGCUCGU---CGGAGCUUUUGCCCGCUCACUUAUCCGGCCAGUUGU ..(.(((.....(((.......)))(((--------------..(((.(((...(.((((((((((..---..)))))))))).).))).))).)))))))...... ( -30.30) >DroSec_CAF1 140416 86 + 1 CCGAGCCAAGCACGUCGAGAGAAUGGGA--------------GAGAGAGA----GAGCGAAAGCUCGU---AGGAGCUUUUGCCCGCUCACUUAUCCGGCCAGUUGU ..(.(((.......((....))..(((.--------------(((.(((.----(.((((((((((..---..)))))))))).).))).))).)))))))...... ( -33.10) >DroSim_CAF1 138917 86 + 1 CCGAGCCAAGCACGUCGAGAGAAUGGGA--------------GAGAGAGA----GAGCGAAAGCUCGU---CGGAGCUUUUGCCCGCUCACUUAUCCGGCCAGUUGU ..(.(((.......((....))..(((.--------------(((.(((.----(.((((((((((..---..)))))))))).).))).))).)))))))...... ( -33.10) >DroEre_CAF1 143471 84 + 1 CCGAGCCCAGCACGUUGAGAGAAUGGGA--------------GA--GUGA----GAGCGAAAGCUCGU---CGGAGCUUUUUCCCGCUCACUUAUCCGGCCAGUUGU ..(.((((((....))).......(((.--------------((--((((----((((....))))((---.((((....)))).)))))))).)))))))...... ( -28.60) >DroYak_CAF1 141631 68 + 1 CCGAGCC----------AGAGAUU----------------------GUGA----GAGCGAAAGCUCGU---CGGAGCUUUUUGCCGCUCACUUAUCCGGCCAGUUGU ..(.(((----------.((....----------------------((((----(.((((((((((..---..)))).))))))..)))))...)).))))...... ( -25.90) >DroPer_CAF1 168065 98 + 1 CCGAGACACGAACAC---GAGCACGAGCACCAGCCGCGCCAGGCACGAGA----GAGCGAAAGCUCAGGACGAGAGCUUUU--CCGCUCAGUUAUCCGGCCAGUUGU ....(((........---(.((.((.((....)))).))).(((.((.((----((((....))))..(((..((((....--..)))).))).))))))).))).. ( -32.60) >consensus CCGAGCCAAGCACGU_GAGAGAAUGGGA______________GAGAGAGA____GAGCGAAAGCUCGU___CGGAGCUUUUGCCCGCUCACUUAUCCGGCCAGUUGU ..(.(((...............................................((((....)))).......((((........))))........))))...... (-18.55 = -18.72 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:31 2006