Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,880,682 – 2,880,794 |
Length | 112 |
Max. P | 0.669473 |
Location | 2,880,682 – 2,880,794 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.07 |
Mean single sequence MFE | -41.08 |
Consensus MFE | -36.24 |
Energy contribution | -35.04 |
Covariance contribution | -1.20 |
Combinations/Pair | 1.24 |
Mean z-score | -1.46 |
Structure conservation index | 0.88 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2880682 112 - 27905053 --------ACCCUGAGGAACCAACGUUAUCUGAGCUGCAGACAAUGGUUUGCGGAUUAGGAGGCUUAACUUCCGUAGGCGAAGGCUGGGAGCGGUUUGGCUGAUCCUGGAGGGGCAGAAU --------.((((.((((..........(((((.((((((((....)))))))).))))).((((.(((((((...(((....))).)))..)))).))))..)))).).)))....... ( -40.40) >DroSec_CAF1 2362 112 - 1 --------ACCCUGAGGAACCUAUGUUAUCUGAGCUGCAGACAAUGGUUUGCGGAUUUGGAGGCUUGACUUCCGUAGGCGAAGGCUGGGAGCGGUUCGGUUGAUCCUGGAGGGGCAGAAU --------.((((.(((((((.......((..((((((((((....)))))))).))..))(..(((.(((((...(((....)))))))))))..))))...)))).).)))....... ( -39.60) >DroSim_CAF1 1099 112 - 1 --------ACCCUGAGGAACCUAUGUUAUCUGAGCUGCAGACAAUGGUUUGCGGAUUUGGAGGCUUGACUUCCGUAGGCGAAGGCUGGGAGCGGUUUGGUUGAUCCUGGAGGGGCAGAAU --------.((((.((((......(((.((..((((((((((....)))))))).))..)))))(..(((.((((.(((....)))....))))...)))..))))).).)))....... ( -40.00) >DroEre_CAF1 2380 120 - 1 AUUUGAAGACCCCGAGGGACCUUUGUUGUCUGAGCUGCAGACAAUUGUUUGUGGAUUUGGGGGCUUGACUUCCGUGGGCGAUGGCUGGGAGCGAUUUGGCUGAUCCUGGAGGGGCAGGAU .......(.((((..((((((((..((((((...(..(((((....)))))..)....(((((.....)))))..))))))..)..)))(((......)))..))))...)))))..... ( -39.40) >DroYak_CAF1 1135 120 - 1 AUUUGAAGACCCCGAGGAACCUCUGUUAUCUGACCUGCAGACAAUAGUUUGUGGGUUUGGGGGCUUGACUUCUGUAGGCGCAGGCUGGGAGCGGUUUGGCUGAUCUUGGAGGGGCAGGAU .........(((((((....)))........((((..(((((....)))))..)))).)))).((((.((((((..(((.(((((((....)))))))))).....))))))..)))).. ( -46.00) >consensus ________ACCCUGAGGAACCUAUGUUAUCUGAGCUGCAGACAAUGGUUUGCGGAUUUGGAGGCUUGACUUCCGUAGGCGAAGGCUGGGAGCGGUUUGGCUGAUCCUGGAGGGGCAGAAU .........((((.((((..........((..((((((((((....)))))))).))..))((((.(((((((...(((....))).)))..)))).))))..)))).).)))....... (-36.24 = -35.04 + -1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:35 2006