| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,504,046 – 22,504,141 |
| Length | 95 |
| Max. P | 0.659145 |
| Location | 22,504,046 – 22,504,141 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 82.89 |
| Mean single sequence MFE | -31.92 |
| Consensus MFE | -23.73 |
| Energy contribution | -24.03 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.659145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22504046 95 - 27905053 --UUCUGCCGCUGUGCCCGCCUGCCGUCCUCCC---AUCC---UGGCUGCCUAACAUUGCGCAUACGCCGCGUGGUCUUAUUAUCAGCCGCAUCAGCGGCGCC --....((((((((((.((.....)).......---....---.(((((..(((.((..(((.......)))..)).)))....)))))))).)))))))... ( -33.30) >DroSec_CAF1 136667 97 - 1 --UUCUGCCGCUGUGCCCGCCUGGCAGCCACCC---AACC-CAUGGCAGCCUAAAAUUGCGCAUACGCCGCGUGGUCUUAUUAUCAGCCGCAUCAGCGGCGCC --....((((((((((..((..(((.((((...---....-..)))).)))(((.((..(((.......)))..)).)))......)).))).)))))))... ( -36.30) >DroSim_CAF1 135149 97 - 1 --UUCUGCCGCUGUGCCCGCCUGGCAGCCACCC---AACC-CAUGGCAGCCUAACAUUGCGCAUACGCCGCGUGGUCUUAUUAUCAGCUGCAUCAGCGGCGCC --....((((((((((..((..(((.((((...---....-..)))).)))(((.((..(((.......)))..)).)))......)).))).)))))))... ( -36.60) >DroEre_CAF1 139726 89 - 1 UCUUCUGCCCCUGUGCCCGCCUGCC-----------AUCC---UGGCAGCCUAACAUUGCGCAUACGCCGCGUGGUCUUAUUAUCAGCCGCAUCAGCGGCGCC ......(((.((((((..(((((((-----------....---.)))))..(((.((..(((.......)))..)).)))......)).))).))).)))... ( -28.50) >DroYak_CAF1 137848 98 - 1 --UUCUGCCGCUGUGCCCGCCUGCCACACUCCCCGCAUCC---UGGCAGCCUAACAUUGCGCAUACGCCGCGUGGUCUUAUUAUCAGCCGCAUCAGCGGCGCC --....((((((((((..((((((((..............---))))))..(((.((..(((.......)))..)).)))......)).))).)))))))... ( -34.04) >DroAna_CAF1 149227 92 - 1 --UUGUGUUGUUUACCUCUCCUUCUGU---------UUCCUGUUGCCACCAUGGCAUUGCGCAUACGCCGCGUGGUCUUAUUAUCAGCCGCAUCAGCGGCGCC --.(((((...................---------.......((((.....))))..)))))..(((((((((((..........)))))....)))))).. ( -22.79) >consensus __UUCUGCCGCUGUGCCCGCCUGCCAGCC_CCC___AUCC___UGGCAGCCUAACAUUGCGCAUACGCCGCGUGGUCUUAUUAUCAGCCGCAUCAGCGGCGCC ......((((((((((..(((.......................)))....(((.((..(((.......)))..)).))).........))).)))))))... (-23.73 = -24.03 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:30 2006