| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,502,446 – 22,502,551 |
| Length | 105 |
| Max. P | 0.602565 |
| Location | 22,502,446 – 22,502,551 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 75.65 |
| Mean single sequence MFE | -25.69 |
| Consensus MFE | -10.34 |
| Energy contribution | -11.15 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22502446 105 - 27905053 UUUGCCACAAA-GUUUUCAGGC-----CGCAAAACUUUUGACAAAGGUCGAGAGCAGUUUAAAGCAGGAG-------CAAAGUGAAACGCUGCCGGCAGCUCCUGCAAAAUAAAUGAA ...........-((((((.(((-----(.(((.....))).....))))))))))........(((((((-------(...(.....)((.....)).))))))))............ ( -28.90) >DroVir_CAF1 222911 98 - 1 UUUGGCACAAA-GUUUUU-GGCUCUGGCAGCAAACUUUUAACAAAGGUCGGCAGCAUUUUAA------------------AGUCAAACGCUGCCGGCAAUUCAUGCAAAAUGAAUGAG ((((....(((-((((..-.((....))...)))))))...)))).(((((((((.(((...------------------....))).))))))))).((((((.....))))))... ( -29.00) >DroWil_CAF1 147895 88 - 1 UUUGCCACAAAAAGUUUCUGGC-----CUCAAAACUUUUGACAAAGGUCGAAACCAUUUUAA------------------AGUCAAACGCUGCCGGCAAUUCCGGCAGAAU------- .............(((((.(((-----(((((.....))))....)))))))))........------------------.........(((((((.....)))))))...------- ( -22.10) >DroYak_CAF1 136230 105 - 1 UGCGCCACAAA-GUUUUCAGGC-----CACAAAACUUUUGACAAAGGUCGAGAGCUGUUUAAAGCAGGGC-------CAAAGUGAAACGCUGCCGGCAGUUCCUGCAAAAUAAAUGAA ...(((....(-((((((((((-----(......((((((((....))))))))((((.....)))))))-------)....))))).)))...)))..................... ( -28.30) >DroAna_CAF1 147473 100 - 1 UUUGCCACAAA-GUUUUU-GGC-----CUCAAAACUUUUGACAAAGGUCGAGAGCAGUUUAAAGCAAAAC-------GAAAGUCAAACGCUGCCGGCCAUUCCUGCAAAAUAAA---- (((((.....(-(....(-(((-----(......((((((((....))))))))........(((...((-------....)).....)))...)))))...))))))).....---- ( -23.30) >DroPer_CAF1 162406 107 - 1 UUUGCCACAAA-GUUUUC-GGC-----CUCAAAACUUUUGACAAAGGUCGAGAGCAGUUUAAAUCCGAAGCCAAAGUCAAAGUCAAACGCUCCAGGCAAUUCCUACAAAAUGAA---- .(((((.....-((((((-(((-----(((((.....))))....))))))))))...........(.(((.................))).).)))))...............---- ( -22.53) >consensus UUUGCCACAAA_GUUUUC_GGC_____CUCAAAACUUUUGACAAAGGUCGAGAGCAGUUUAAAGCAG_A________CAAAGUCAAACGCUGCCGGCAAUUCCUGCAAAAUAAA____ .(((((............................((((((((....))))))))..........................(((.....)))...)))))................... (-10.34 = -11.15 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:29 2006