| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,500,266 – 22,500,364 |
| Length | 98 |
| Max. P | 0.787789 |
| Location | 22,500,266 – 22,500,364 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.12 |
| Mean single sequence MFE | -29.75 |
| Consensus MFE | -18.08 |
| Energy contribution | -20.33 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.787789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22500266 98 + 27905053 GCAGCUUGUUUAAUAAUAAGCAGCUUAUCCUUAGUCCCGAACGUUUGUUCGGGAUUUUGCUAGCAGCUUUGCGGGAAAAUUUUAA---------GU----CGACUGGGGCU ((.(((((((....))))))).))....((((((((((((((....))))))((((((.((.((......)))).))))))....---------..----.)))))))).. ( -32.90) >DroSec_CAF1 132891 98 + 1 GCAGCUUGUUGAAUAAUAAGCAGCUUAUCCUUAGUCGCGAACGUUUGUUCGGGAUUUUGCUGGCAGCUUUGCGGGAAAAUUUCAA---------GU----CGACUGGGGCU ((.(((((((....))))))).))....((((((((((((((....))))(..(((((.((.((......)).)))))))..)..---------).----))))))))).. ( -35.00) >DroSim_CAF1 131373 98 + 1 GCAGCUUGUUGAAUAAUAAGCAGCUUAUCCUUAGUCGCGAACGUUUGUUCGGGAUUUUGCUGGCAGCUUUGCGGGAAAAUUUUAA---------GU----CGACUGGGGCU ((.(((((((....))))))).))....((((((((((((((....))))((((((((.((.((......)).))))))))))..---------).----))))))))).. ( -32.30) >DroEre_CAF1 136023 106 + 1 GCAGCUUGUUGAAUAAUAAGCAGCUUAUCCUUAGUCAGGAGCGUUUGUUCGGGAUUUUGCUGGCAGCUUUGCGGGAA-AUUUUAACUGGGGCUUAU----CAACUGGGGCU ((.(((((((....))))))).))....(((((((...((((.(..(((.((((((...((.((......)).)).)-))))))))..).))))..----..))))))).. ( -29.30) >DroYak_CAF1 134024 93 + 1 GCAGCUUGUUGAAUAAUAAGCAGCUUAUCCUUAGUCAGGAGCGUUUGUUUGGGAUUUUGCUAACAGCUUUGCGAGAA-AUUUUAA---------AG----CGACUA----U ...(((((((....)))))))(((..(((((....((((....))))...)))))...)))....((((((.((...-.)).)))---------))----).....----. ( -22.70) >DroAna_CAF1 144835 93 + 1 ACAGCUUGUUGAAUAAUAAGCAGCUUAGCCACAGCCA-GAGCGUUUAUACGGGAGUAUACUGGGAAU--------AGAAUUUUAA---------AUGCUCAGAAUGGGGCA ...(((((((....)))))))......(((.((..(.-((((((((((((....)))..(((....)--------)).....)))---------)))))).)..)).))). ( -26.30) >consensus GCAGCUUGUUGAAUAAUAAGCAGCUUAUCCUUAGUCACGAACGUUUGUUCGGGAUUUUGCUGGCAGCUUUGCGGGAAAAUUUUAA_________AU____CGACUGGGGCU ((.(((((((....))))))).))....((((((((..((((....))))((((((((.((.((......)).))))))))))..................)))))))).. (-18.08 = -20.33 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:28 2006