Locus 8436

Sequence ID 3R_DroMel_CAF1
Location 22,497,896 – 22,497,987
Length 91
Max. P 0.770913
window13584

overview

Window 4

Location 22,497,896 – 22,497,987
Length 91
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 79.09
Mean single sequence MFE -21.20
Consensus MFE -12.68
Energy contribution -12.52
Covariance contribution -0.16
Combinations/Pair 1.29
Mean z-score -1.85
Structure conservation index 0.60
SVM decision value 0.53
SVM RNA-class probability 0.770913
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22497896 91 - 27905053
UAAUUUAAGCAUUUUUAUGUGUUUACCAACGCCGCCGUCGCUGUCACAGUCGCCGCUUC-----GGUCGACGGCGUUUGCUUUUCAUUUCUUUAAU
......(((((.......(((((....)))))(((((((((((....(((....))).)-----)).))))))))..))))).............. ( -24.60)
>DroSec_CAF1 130520 96 - 1
UAAUUUAAGCAUUUUUAUGUGUUUACCAACGCCGCCGUCGCUGUCGCAGUCGCCGCCUCCGUCCGGUCGUCGGCGUUUGCUUUUCAUUUCUUUAAU
.....(((((((......))))))).....((.((....)).)).((((.((((((..((....))..).))))).))))................ ( -22.50)
>DroSim_CAF1 128971 96 - 1
UAAUUUAAGCAUUUUUAUGUGUUUACCAACGCCGCCGUCGCUGUCGCAGUCGCCGCCUCGGUCCGGUCGUCGGCGUUUGCUUUUCAUUUCUUUAAU
.....(((((((......)))))))..((((((((((..((((..((.......))..)))).)))....)))))))................... ( -23.40)
>DroEre_CAF1 133595 73 - 1
UAAUUUAAGCAUUUUUAUGUGUUUACCAACGCCGCCGUCG-----------------------CAGUCGUCGGCGUUUGCUUUUCAUUUCUUUAAU
......(((((.......(((((....)))))(((((.((-----------------------....)).)))))..))))).............. ( -16.70)
>DroMoj_CAF1 228743 82 - 1
UAAUUUAAGCACUUUUAUGUGUUUGCCAACGUCGUCGUCGCUGGCGUUGG--------------CUGCUUUAGCGUUUGUUUUUCAUUUCUAUAAU
......((((((......))))))((((((((((.......)))))))))--------------).((....))...................... ( -21.80)
>DroAna_CAF1 142357 85 - 1
UAAUUUAAGCAUUUUUAUGUGUUUGCCAACGUUGGAGUCGCAGUCGCAGUC------U-----CAGUCGGCGGCGUUUGCUUUUCAUUUCUUUAAU
.....(((((((......))))))).........(((..((((.(((.(((------.-----.....))).))).))))..)))........... ( -18.20)
>consensus
UAAUUUAAGCAUUUUUAUGUGUUUACCAACGCCGCCGUCGCUGUCGCAGUC______U_____CGGUCGUCGGCGUUUGCUUUUCAUUUCUUUAAU
.....(((((((......)))))))..(((((((.((.(..........................).)).)))))))................... (-12.68 = -12.52 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:27 2006