Locus 8432

Sequence ID 3R_DroMel_CAF1
Location 22,485,841 – 22,485,935
Length 94
Max. P 0.999678
window13576

overview

Window 6

Location 22,485,841 – 22,485,935
Length 94
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 77.62
Mean single sequence MFE -25.43
Consensus MFE -20.83
Energy contribution -21.50
Covariance contribution 0.67
Combinations/Pair 1.14
Mean z-score -3.07
Structure conservation index 0.82
SVM decision value 3.88
SVM RNA-class probability 0.999678
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22485841 94 + 27905053
C--UCCAGGACUACCUGCCACAUCUACUUACAGCAGCAGCACUCUGAGUUGCGGGAAAUUAUUUAUAAAAUAGUUUUCCGCACUGCUCGUGCAUUC
.--..((((....)))).....................((((...((((((((((((((((((.....))))))))))))))..)))))))).... ( -29.10)
>DroSim_CAF1 116567 94 + 1
C--UCCAGGACUACCUGCCACAUCUACUUACAGCAGCAGCACUCUGAGUUGCGGGAAAUUAUUUAUAAAAUAGUUUUCCGCACUGCUCGUGCAUUC
.--..((((....)))).....................((((...((((((((((((((((((.....))))))))))))))..)))))))).... ( -29.10)
>DroAna_CAF1 129896 86 + 1
UUCAGCCAAACCCCAUUCCGCUGCUACUUAC------UGCUCUCAGAGUUGUGGGAAAAUAUUUAUAAAAUAGUUUCCCG----GCUUGUGCAUUC
....(((((.((.................((------.((((...)))).))((((((.((((.....)))).)))))))----).))).)).... ( -18.10)
>consensus
C__UCCAGGACUACCUGCCACAUCUACUUACAGCAGCAGCACUCUGAGUUGCGGGAAAUUAUUUAUAAAAUAGUUUUCCGCACUGCUCGUGCAUUC
......................................((((...((((((((((((((((((.....))))))))))))))..)))))))).... (-20.83 = -21.50 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:19 2006