Locus 8430

Sequence ID 3R_DroMel_CAF1
Location 22,482,420 – 22,482,517
Length 97
Max. P 0.945087
window13572

overview

Window 2

Location 22,482,420 – 22,482,517
Length 97
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 64.90
Mean single sequence MFE -37.17
Consensus MFE -14.70
Energy contribution -17.20
Covariance contribution 2.50
Combinations/Pair 1.21
Mean z-score -2.72
Structure conservation index 0.40
SVM decision value 1.35
SVM RNA-class probability 0.945087
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22482420 97 + 27905053
--------------UGUCUGGAGGCUCCAUCUCUGGAGGCUCGAUCUCAGGUGGCUCCAUCUCAGGUGGCUCCAUCUCAGGUGGCUCCAUUUCUGGUGGUUCCCUUUCUAG
--------------......(((.(((((....))))).)))((((((((((((..((((((.(((((....))))).))))))..))))..)))).)))).......... ( -36.50)
>DroSec_CAF1 115398 82 + 1
-----------------------------UCUCUGGAGGCUCUCUAUCUGGAGGCUCCAUCUCAGGUGGCUCCAUCUCAGGUGGCUCCAUCUCAGGUGGUUCCCUCUCUAG
-----------------------------...(((((((....(((((((((((..((((((.(((((....))))).))))))..)).)).))))))).....))))))) ( -34.10)
>DroSim_CAF1 113110 111 + 1
AUCUGGAGGCUCUCUAUCUGGAGGCUCCAUUUCUGGAGGCUCUAUCUCGGGUGGCUCCAUCUCAGGUGGUUCCAUCUCAGGUAGCUCCAUCUCUGGUGGUUCCCUCUCUAG
...(((((.((((......)))).)))))...(((((((..((((((.((((((..((((.....))))..)))))).))))))..((((.....)))).....))))))) ( -44.00)
>DroMoj_CAF1 211942 97 + 1
--------------UGACGGAUGGUUCGCUAACCGGUGGCUCUCUAACCGGGGGCUCACUAAACGGUGGCUCUCUAACCGCUGGCUCACUUAACGGUGGCUCAUUAUCUAG
--------------....(((((((..((((.((((((((((((.....)))))).)))....((((((........))))))..........)))))))..))))))).. ( -34.10)
>consensus
______________UGUCUGGAGGCUCCAUCUCUGGAGGCUCUAUAUCAGGUGGCUCCAUCUCAGGUGGCUCCAUCUCAGGUGGCUCCAUCUCUGGUGGUUCCCUCUCUAG
................................(((((((.....))))))).((..(((((..((((((..((((.....))))..))))))..)))))..))........ (-14.70 = -17.20 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:16 2006