Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,465,189 – 22,465,279 |
Length | 90 |
Max. P | 0.717758 |
Location | 22,465,189 – 22,465,279 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 82.57 |
Mean single sequence MFE | -34.04 |
Consensus MFE | -18.30 |
Energy contribution | -19.10 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.31 |
Structure conservation index | 0.54 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22465189 90 - 27905053 AUAAUAUCUGGUGG-------CUGGCGGUCACUGCUCACUGG--AUGGGAUGCCAGUUGCCAGUUGCCAGUUACCAGUCGGCAGUUGGUGCUCCGGGUU .......(((((((-------((((((...((((...(((((--........)))))...)))))))))))))))))((((.(((....)))))))... ( -37.70) >DroSec_CAF1 98485 76 - 1 AUAAUAUCUGGCGG-------CUGGCGGUCACUGCUCACUGG--AUGGGAUGCCAGUUGCC--------------AGUUGGCAGUUGGUGCUCCGGGUU .....((((((...-------..((((.(.((((((.(((((--.(((....)))....))--------------))).)))))).).)))))))))). ( -29.90) >DroSim_CAF1 95401 83 - 1 AUAAUAUCUGGCGG-------CUGGCGGUCACUGCUCACUGG--AUGGGAUGCCAGUUGCC-------AGUUACCAGUUGGCAGUUGGUGCUCCGGGUU .......(((((((-------((((((.((.(((.((....)--)))))))))))))))))-------))..(((....((((.....))))...))). ( -30.60) >DroEre_CAF1 99399 92 - 1 AUAAUAUCUGGCGGAUGGCGGAUGGCGGUCACUGGUCACUGGUCACUGGAUGCCAGUUGCC-------AGUUUCCAGUUGGCAGUUGGUGCUCCGGGUU .....((((((.....((((..((((.((((((((..((((((.(((((...))))).)))-------)))..)))).)))).)))).)))))))))). ( -37.30) >DroYak_CAF1 98123 78 - 1 AUAAUAUCUGGCGA-------CUGGCGGUCACUGCUCACUGGUCACUGGAUGCCAGUUA--------------CCAGUUGGCUGUUGGUGCUCCGGGUU .....((((((.((-------(..(((((((......((((((.(((((...))))).)--------------))))))))))))..)).).)))))). ( -34.70) >consensus AUAAUAUCUGGCGG_______CUGGCGGUCACUGCUCACUGG__AUGGGAUGCCAGUUGCC_______AGUU_CCAGUUGGCAGUUGGUGCUCCGGGUU .....((((((............((((.(.((((((.(((((...............................))))).)))))).).)))))))))). (-18.30 = -19.10 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:14 2006