| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,459,050 – 22,459,151 |
| Length | 101 |
| Max. P | 0.500000 |
| Location | 22,459,050 – 22,459,151 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 81.89 |
| Mean single sequence MFE | -27.38 |
| Consensus MFE | -17.47 |
| Energy contribution | -17.81 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22459050 101 + 27905053 GGCCGGAUGAAUGGCCAAUAACAAAG--AGCCAAAGUGGUCAG---CGACAGAUCUU-UUCAAGAGCACCCACUAUACGCUCGAUUAGCAUAAG-------CAGAAAAGUGGCU (((((......)))))..........--(((((..((.(....---).))....(((-(((..((((...........)))).....((....)-------).))))))))))) ( -28.10) >DroPse_CAF1 114496 106 + 1 GGCCGGAUGAAUGGCCAAUAACAAAG--AGCCAAAGUGGACAU---CGACUGCUCUG-UUCAAGAGCACCCACU--ACGGCUGAUUAGCAUAAACCGAAAACAGAAACGUCACC (((((......)))))..........--((((..(((((....---....((((((.-....)))))).)))))--..))))................................ ( -27.10) >DroEre_CAF1 92964 101 + 1 GGCCGGAUGAAUGGCCAAUAACAAAG--AGUCAAAGUGGUCGG---CGACAGAUCUU-UUCAAGAGCACCCACUAUACGCUCGAUUAGCAUAAG-------CAGAAAAGUGGCC (((((......)))))..........--.((((..((.(....---).))....(((-(((..((((...........)))).....((....)-------).)))))))))). ( -24.40) >DroWil_CAF1 99995 104 + 1 GACCGGAUGAAUGGCCAAUAAUAAAACCGCCUAAAGUGGACAGCAUCGACAGCUCUG-UUCAAGAGCACCCACU--ACGGCCGAUUUGCAUAAA-------CAGAAGAGCUGGC ..((((.....(((((..........((((.....))))............(((((.-....))))).......--..))))).((((......-------))))....)))). ( -26.00) >DroAna_CAF1 103014 100 + 1 GGCCGGAUGAAUGGCCAAUAACAACG--AGCCAAAGUGGUCAA---CGACAGCUCUUUUUCAAGAGCACCCACU--ACGGCCGAUUUGCAUAAA-------CAGAAAAGUCGUC (((((......(((((.........)--.)))).(((((((..---.))).((((((....))))))...))))--.)))))(((((.......-------.....)))))... ( -29.10) >DroPer_CAF1 115137 106 + 1 GGCCGGAUGAAUGGCCAAUAACAAAC--AGCCAAAGUGGACAU---CGGCAGCUCUG-UUCAAGAGCACCCACU--ACGGCUGAUUAGCAUAAACCGAAAACAGAAACGUCACC (((((......))))).........(--((((..(((((.(..---..)..(((((.-....)))))..)))))--..)))))............................... ( -29.60) >consensus GGCCGGAUGAAUGGCCAAUAACAAAG__AGCCAAAGUGGACAG___CGACAGCUCUG_UUCAAGAGCACCCACU__ACGGCCGAUUAGCAUAAA_______CAGAAAAGUCGCC (((((......((((..............)))).(((((.(......)...(((((......)))))..)))))...)))))................................ (-17.47 = -17.81 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:11 2006