Locus 8425

Sequence ID 3R_DroMel_CAF1
Location 22,457,526 – 22,457,632
Length 106
Max. P 0.898378
window13566

overview

Window 6

Location 22,457,526 – 22,457,632
Length 106
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 68.51
Mean single sequence MFE -34.78
Consensus MFE -9.25
Energy contribution -9.03
Covariance contribution -0.22
Combinations/Pair 1.24
Mean z-score -2.38
Structure conservation index 0.27
SVM decision value 1.00
SVM RNA-class probability 0.898378
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22457526 106 - 27905053
GUUCUAGUUGGAGCUCCGGAGUCGGAAGUCAGAAUGAUGUCGAGCUGAGCCGCCGGGCCAUUUAUAUGGCCUGGCCGACACGGCAGGGGCGUCAA--UCAGAACAGGC
(((((.((((..(((((....((((..(((.....))).))))((((.((.((((((((((....)))))))))).).).)))).)))))..)))--).))))).... ( -50.70)
>DroPse_CAF1 112883 84 - 1
GUUCUACUUGGAGCUCUCGA-------UUGAGAAUGAUGUCGGAGGUGGCUGGUGGGCCAUUUAUAUA---------------CAUGGAUGUCAA--UCAGAACAAGC
(((((....)))))(((.((-------((((.(.(.((((...((((((((....))))))))....)---------------))).).).))))--)))))...... ( -25.40)
>DroGri_CAF1 133976 90 - 1
GUUCUAGUUGGAGCUAUGA-------GCACAGAAUGAUGUGCUGAAGAGGUGACGUGCCAUUUUUAUACCAUG-----------AUGAAUGUCACUCUCAGAACAAAC
(((((...........(.(-------(((((......)))))).).((((((((((..((((..........)-----------))).))))))).)))))))).... ( -28.80)
>DroYak_CAF1 90307 106 - 1
GUUCUAGUUGGAGCUCCGGAGUCGGAAGUCAGAAUGAUGUCGAACUGAGCCGCCGUGCCAUUUAUAUGGCCUGGUCGACACGGCAGGGGCGUCAA--UCAGAACAGGC
(((((.((((..(((((((..((((..(.((......)).)...)))).))((((((((((....)))))..(.....)))))).)))))..)))--).))))).... ( -41.40)
>DroAna_CAF1 101509 102 - 1
GUUCUAGUUGGAGCUCUGAGGCCAGAAGUCAGAAUGAUGUCGGAGUGAGACUUUGGGCCAUUUAUAUGCCAUGG----CACGGACGGGGCGUCAA--UCAGAACAGGC
(((((.((((..((((((.((((.((((((....((....))......)))))).)))).......(((....)----))....))))))..)))--).))))).... ( -38.40)
>DroPer_CAF1 113529 84 - 1
GUUCUACUUGGAGCUCUCGA-------UUGAGAAUGAUGUCGGAGGUGGCCGGUGUGCCAUUUAUAUA---------------CAUGGAUGUCAA--UCAGAACAAGC
(((((....)))))(((.((-------((((.(.(.((((...(((((((......)))))))....)---------------))).).).))))--)))))...... ( -24.00)
>consensus
GUUCUAGUUGGAGCUCUGGA______AGUCAGAAUGAUGUCGGAGUGAGCCGCCGGGCCAUUUAUAUA_C_UG__________CAGGGACGUCAA__UCAGAACAAGC
(((((.........(((((.........))))).(((((((..............................................))))))).....))))).... ( -9.25 =  -9.03 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:10 2006