| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,451,383 – 22,451,499 |
| Length | 116 |
| Max. P | 0.581261 |
| Location | 22,451,383 – 22,451,499 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.49 |
| Mean single sequence MFE | -37.53 |
| Consensus MFE | -22.86 |
| Energy contribution | -23.15 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22451383 116 + 27905053 CACGGCGGCGGUAACUAUAUAUACUAACCCAACUUCGAAGCUGGCGGCGCAGUUUUUCG---AAGACAAAGCGCUGAUGCUGCUAAAUGUUU-UGUCCGCCUACAAAGUAGGCAGCGAAC ...((((((((((........)))).......(((((((((((......))))..))))---))).............))))))......((-(((..((((((...)))))).))))). ( -32.80) >DroVir_CAF1 150034 117 + 1 CGCGUCGGCGGUUAUUAUUUAUACAAAUCUGACUUCGAGGCUGUCAGCGUGGCUUCUCGUAAAACACAAUGCGGCGGCUUCGCUAAAUGUCU-UUUCCGCAUUGAAA-UA-GCUGCGUUC .......(((((((((....................(((((..(....)..)))))..........((((((((.(((..........))).-...)))))))).))-))-))))).... ( -31.60) >DroPse_CAF1 106294 116 + 1 UGCGGUGGUGGUUAUUAUUUAUACAAAUCUGUCUUCGAGGCUGUCAGCGCAGCUUCUCG---AAGACAAAGCGAUGACGCCGCUAAAUGUUU-UUUCCGCCUACAAAGUAGGCAGCGCUC .(((((((((.((((..(((.........(((((((((((((((....)))))..))))---)))))))))..)))))))))).........-.....((((((...))))))..))).. ( -43.40) >DroWil_CAF1 91548 120 + 1 AGCCGCGACGGUUAUUAUUUAUACAAAUCUGUCUUCGAGGCUGUCAGCGCAGCUUCUCGAUGAAGACAAAGCGUUGACGGCGCUAAACGUUUUUUUCCGCCUACAAAGUAGGCAGCAUUC .(((((((((.((...((((....)))).(((((((((((((((....)))))))).....))))))))).))))).))))(((....(........)((((((...))))))))).... ( -40.70) >DroAna_CAF1 94988 116 + 1 CGCGGCGGUGGUUAUUAUUUAUACGAAUUGGAUUUCGAGGCUGUCGGCGCAGCUUCUCG---AAGACAAAGCGAUCGCACGGCUAAAUUUUU-UUUCCGCCUACAAAGUAAGCAGCGAUC (((.(((((((.....(((((..((..(((..((((((((((((....)))))..))))---))).))).((....)).))..)))))....-...)))))(((...))).)).)))... ( -33.30) >DroPer_CAF1 106951 116 + 1 UGCGGUGGUGGUUAUUAUUUAUACAAAUCUGUCUUCGAGGCUGUCAGCGCAGCUUCUCG---AAGACAAAGCGAUGACGCCGCUAAAUGUUU-UUUCCGCCUACAAAGUAGGCAGCGCUC .(((((((((.((((..(((.........(((((((((((((((....)))))..))))---)))))))))..)))))))))).........-.....((((((...))))))..))).. ( -43.40) >consensus CGCGGCGGCGGUUAUUAUUUAUACAAAUCUGACUUCGAGGCUGUCAGCGCAGCUUCUCG___AAGACAAAGCGAUGACGCCGCUAAAUGUUU_UUUCCGCCUACAAAGUAGGCAGCGAUC ((((((((((..........................(((((((......)))))))((......))...........)))))))..............((((((...)))))).)))... (-22.86 = -23.15 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:08 2006