| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,449,027 – 22,449,132 |
| Length | 105 |
| Max. P | 0.802089 |
| Location | 22,449,027 – 22,449,132 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.27 |
| Mean single sequence MFE | -41.63 |
| Consensus MFE | -27.12 |
| Energy contribution | -27.43 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.802089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22449027 105 + 27905053 GAUAGA---------------GCCGCUGCCAGGAGCGAAGGACAGUCCGGAGCUGGAGUGGCCAACGGGCUGGUAGUUGUAGCCGAGCUUAUCGGCGCAGGUGACUGCCACCAAACACAG ......---------------((.((((((((...((..((.((.((((....)))).)).))..))..)))))))).)).(((((.....)))))((((....))))............ ( -42.50) >DroVir_CAF1 146462 105 + 1 GAUGCUU---------------CCGCUGCCAGGGGCGAAGGAUAAUCCUUGGUUGGAGUGUCCAACGGGUUGGUAGUUGUAGCCCAGUUUAUCGGCGCAGGCAACGGCCACCAAGCACAU ..(((((---------------(((.((((.(.(.(((.(((((.(((......))).)))))...((((((.......))))))......))).).).)))).))).....)))))... ( -38.90) >DroGri_CAF1 124526 120 + 1 GAGGCCUCCAAGGCUUCCACUUCCGCUACCAGGAGCAAACGACAAUCCUGAGCCGGAGUGUCCGACGGGCUGGUAGUUGUAGCCAAGUUUAUCGGCGCAGGCAACUGCCACCAAGCACAU ((((((.....))))))((((((.(((..(((((...........)))))))).))))))...(...((.((((((((((.(((.........)))....))))))))))))...).... ( -47.60) >DroSec_CAF1 82300 105 + 1 AAUGCU---------------GCCACUGCCAGGAGCGAAGGACAGUCCAGAGCUGGAGUGGGCCACGGGCUGGUAGUUGUAGCCGAGCUUAUCGGCGCAGGUGACUGCCACCAAACACAG .....(---------------((.((((((((...((..((.((.((((....)))).))..)).))..)))))))).)))(((((.....)))))((((....))))............ ( -42.10) >DroAna_CAF1 92588 108 + 1 UAGAGA---------UGC---ACCACUGCCUGGACUGAAGGAAAGCCCGGAGCUGGAGUGGCCAACAGGCUGAUAGUUAUAGCCGAGCUUAUCGGCGCAGGCAACUGCCACUAAACACAG ......---------...---.(((..((((((.((.......)).)))).))))).((((((....)))...((((....(((((.....)))))((((....)))).))))..))).. ( -36.20) >DroPer_CAF1 104372 105 + 1 GAUGCU---------------GCCGCUGCCAGGAGCGAAAGACAGGCCGGAGUUGGAGUGUCCCACAGGCUGGUAGUUGUAGCCGAGCUUAUCGGCGCAGGCGACUGCCACCAAACACAA ((((((---------------.(.(((.((.((..(....).....))))))).).)))))).....((.((((((((((.(((((.....)))))....))))))))))))........ ( -42.50) >consensus GAUGCU_______________GCCGCUGCCAGGAGCGAAGGACAGUCCGGAGCUGGAGUGGCCAACGGGCUGGUAGUUGUAGCCGAGCUUAUCGGCGCAGGCAACUGCCACCAAACACAG .......................((((.((...(((...((.....))...))))))))).......((.((((((((((.(((((.....)))))....))))))))))))........ (-27.12 = -27.43 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:07 2006