| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,442,241 – 22,442,335 |
| Length | 94 |
| Max. P | 0.723834 |
| Location | 22,442,241 – 22,442,335 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.94 |
| Mean single sequence MFE | -21.28 |
| Consensus MFE | -13.21 |
| Energy contribution | -13.43 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723834 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22442241 94 - 27905053 -UAAAUCAA-----AUCAAAUU-UCGCCGAG----------CUGGCCAAUUUGUUUGGCAAAUUGUGUUAGCGAUAUAAAUAUUUUGUAUUGACAAUCAAACGGCAACGAC -........-----........-..((((.(----------((((((((((((.....))))))).))))))(((((((.....)))))))..........))))...... ( -25.80) >DroPse_CAF1 96359 99 - 1 -UAAAUCAAAUCAAAUCAAAUU-UCGCCGAU----------UGGGCCAAUUUGUUUAGCAAAUUGUGUUAGCGUUCAAAACGUUUUGUAUUGACAAUCAAACGGCAACGAC -.....................-..((((.(----------((((((((((((.....))))))).)))(((((.....)))))((((....)))).))).))))...... ( -19.80) >DroSim_CAF1 72157 94 - 1 -UAAAUCAA-----AUCAAAUU-UCGCCGAG----------CUGGCCAAUUUGUUUGGCAAAUUGUGUUAGCGAUAAAAAUAUUUUGUAUUGACAAUCAAACGGCAACGAC -........-----........-..((((.(----------((((((((((((.....))))))).))))))(((...(((((...)))))....)))...))))...... ( -24.60) >DroEre_CAF1 76334 94 - 1 -UAAAUCAA-----AUCAAAUU-UCGCCGAG----------CUGGCCAAUUUGUUUGGCAAAUUGUGUUAGCGAUAAAAAUACGUUGUAUUGACAAUCAAACGGCAACGAC -........-----........-..((((.(----------((((((((((((.....))))))).))))))(((...(((((...)))))....)))...))))...... ( -25.90) >DroMoj_CAF1 167923 106 - 1 AAACAUCAA-----AUCAAAUUAUUGGCAAUUUACAUAUCUUUGGCCAAUUUAUUCGUCAAUUUGCCAUAACGGUCGAAGUAUUUUGUGUAAACAAUCAAGUAUCGACGAC .........-----........((((((................))))))....(((((..((((((.....)).))))(((((((((....)))...)))))).))))). ( -16.39) >DroAna_CAF1 81794 94 - 1 -UAAAUCAA-----AUCAAAUU-UCGCCGAG----------UUGGCCAAUUUGUUUACCAAAUUGUAUUAGCGAUGAAAACAUUUUGUAUUGACAAUCAAACGGCAACGAC -........-----........-..((((.(----------((((.(((((((.....)))))))..)))))............((((....)))).....))))...... ( -15.20) >consensus _UAAAUCAA_____AUCAAAUU_UCGCCGAG__________CUGGCCAAUUUGUUUGGCAAAUUGUGUUAGCGAUAAAAAUAUUUUGUAUUGACAAUCAAACGGCAACGAC .........................((((............((((((((((((.....))))))).))))).............((((....)))).....))))...... (-13.21 = -13.43 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:04 2006