Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,877,048 – 2,877,192 |
Length | 144 |
Max. P | 0.844151 |
Location | 2,877,048 – 2,877,152 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.12 |
Mean single sequence MFE | -24.07 |
Consensus MFE | -20.29 |
Energy contribution | -20.10 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -1.73 |
Structure conservation index | 0.84 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2877048 104 - 27905053 UGCUGGCCCAUGUUCGCAAUGGAACUUCACUCCAUGCACUCGAGCCUAGCAGGUGGCCCCAGUAUCCGGCCACUCCC---------------C-AUUUUCUCCUCCCUCCUUCUUCGUUC (((((((.(..((..(((.((((.......)))))))))..).))).))))(((((((.........)))))))...---------------.-.......................... ( -26.70) >DroSec_CAF1 8191 92 - 1 UGCUGGCCCAUGUUCGCAAUGGAACUUCACUCCAUGCACUCGAGCCUAGCAGGUGGCCCCAGCAUCCG----------------------------UUUCUCCUCCCUCCAUCUUCAUUC ((((((.((......(((.((((.......)))))))......(((.....)))))..))))))....----------------------------........................ ( -20.60) >DroSim_CAF1 10590 105 - 1 UGCUGGCCCAUGUUCGCAAUGGAACUUCACUCCAUGCACUCGAGCCUAGCAGGUGGCCCCAGCAUCCGGCCACUCCC---------------CCCAUUUCUCCUCCCUCCAUCUUCAUUC (((((((.(..((..(((.((((.......)))))))))..).))).))))(((((((.........)))))))...---------------............................ ( -26.70) >DroEre_CAF1 9209 120 - 1 UGCUGGCCCAUGUUCGCAAUGGAACUUCACUCCAUGCACUCGAGCCUAGCAGGUGGCCCCAGCAUCCGGCGACUCCCCUAAUCCUCCAUUCCCCCAUUCCUGCUCCCUCCUUCUUCAUUC (((((((.(..((..(((.((((.......)))))))))..).))).))))(((.(((.........))).))).............................................. ( -22.30) >consensus UGCUGGCCCAUGUUCGCAAUGGAACUUCACUCCAUGCACUCGAGCCUAGCAGGUGGCCCCAGCAUCCGGCCACUCCC_______________C_CAUUUCUCCUCCCUCCAUCUUCAUUC ((((((.((......(((.((((.......)))))))......(((.....)))))..))))))........................................................ (-20.29 = -20.10 + -0.19)
Location | 2,877,075 – 2,877,192 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.81 |
Mean single sequence MFE | -40.98 |
Consensus MFE | -38.35 |
Energy contribution | -38.35 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.94 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2877075 117 + 27905053 ---GGGAGUGGCCGGAUACUGGGGCCACCUGCUAGGCUCGAGUGCAUGGAGUGAAGUUCCAUUGCGAACAUGGGCCAGCAUGUCGCUCCAUUAAUUUGCCAUAAAACAGAAGUGGACUAA ---....(((((..(.((.((((((.((.((((.((((((..(((((((((.....))))).))))....)))))))))).)).)))))).)).)..))))).................. ( -42.40) >DroSec_CAF1 8215 108 + 1 ------------CGGAUGCUGGGGCCACCUGCUAGGCUCGAGUGCAUGGAGUGAAGUUCCAUUGCGAACAUGGGCCAGCAUGUCGCUCCAUUAAUUUGCCAUAAAACAGAAGUGGACUUA ------------(((((..((((((.((.((((.((((((..(((((((((.....))))).))))....)))))))))).)).))))))...)))))((((.........))))..... ( -38.40) >DroSim_CAF1 10618 117 + 1 ---GGGAGUGGCCGGAUGCUGGGGCCACCUGCUAGGCUCGAGUGCAUGGAGUGAAGUUCCAUUGCGAACAUGGGCCAGCAUGUCGCUCCAUUAAUUUGCCAUAAAACAGAAGUGGACUAA ---....(((((.((((..((((((.((.((((.((((((..(((((((((.....))))).))))....)))))))))).)).))))))...))))))))).................. ( -42.70) >DroEre_CAF1 9249 120 + 1 UAGGGGAGUCGCCGGAUGCUGGGGCCACCUGCUAGGCUCGAGUGCAUGGAGUGAAGUUCCAUUGCGAACAUGGGCCAGCAUGUCGCUCCAUUAAUUUGCCAUAAAACAGAAGUGGACUAA ......(((((.(((((..((((((.((.((((.((((((..(((((((((.....))))).))))....)))))))))).)).))))))...))))).).....((....)).)))).. ( -40.40) >consensus ___GGGAGUGGCCGGAUGCUGGGGCCACCUGCUAGGCUCGAGUGCAUGGAGUGAAGUUCCAUUGCGAACAUGGGCCAGCAUGUCGCUCCAUUAAUUUGCCAUAAAACAGAAGUGGACUAA ............(((((..((((((.((.((((.((((((..(((((((((.....))))).))))....)))))))))).)).))))))...)))))((((.........))))..... (-38.35 = -38.35 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:32 2006