| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,433,946 – 22,434,053 |
| Length | 107 |
| Max. P | 0.962113 |
| Location | 22,433,946 – 22,434,053 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 71.65 |
| Mean single sequence MFE | -37.43 |
| Consensus MFE | -19.49 |
| Energy contribution | -20.44 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.962113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22433946 107 - 27905053 ACCACAAGCUCAUCAUCGUUGGCGGAUGAGGAAAAGCGGCAAACAAGCCGCGGAAUUGCGUUUGCCGGC----GAAUGUAUAUAUGCAG--------GCGCACUUGUAGUUGUUACUGU ((.(((((.......(((((((((((((.......(((((......))))).......)))))))))))----)).........(((..--------..)))))))).))......... ( -36.44) >DroGri_CAF1 108675 98 - 1 ACCACAUGUUCGUCAACAGCCCUUG----------GCUUUAGCCACGUCAGCGAAAUGCUGCUGCCGUU-------AUUCUGU----UGUUGUCAAUAUGAUGCUGUUGAUGUCGACGU .....(((((((((((((((....(----------((....)))(((.(((((......))))).))).-------(((.(((----((....))))).)))))))))))))..))))) ( -31.70) >DroSec_CAF1 67383 97 - 1 ACCACAAGCUCAUCAUCGACGGCGGAUGAGGAAAAGCGUCGAACAAGCCGCGGAAUUGCGUUUGCCGGC----GUAUGU------------------GUGCUCUUGUAGUUGUUACUGU ((.(((((..((((((((.(((((((((.......(((.(......).))).......))))))))).)----).))).------------------)))..))))).))......... ( -28.54) >DroSim_CAF1 63846 111 - 1 ACCACAAGCUCAUCAUCGUCGGCGGAUGAGGAAAAGCGGCGAACAAGCCGCGGAAUUGCGUUUGCCGGCGAGCGUAUGUACAUAUGCAG--------GCGCACUUGUAGUUGUUACUGU ((.(((((.......(((((((((((((.......(((((......))))).......)))))))))))))((((.((((....)))).--------)))).))))).))......... ( -46.04) >DroEre_CAF1 65907 107 - 1 ACCACAAGCUCAUCAUCGUCGGCGGAUGAGGAAAAGCGGCGUACAAGCCGCGGAAUUGCGUUUGCCGGC----GUAUGUCUGUAUGUAU--------GUGCACUUGUAGUUGUUACUGU ((.(((((.....(((((((((((((((.......(((((......))))).......)))))))))))----).)))..(((((....--------)))))))))).))......... ( -39.14) >DroYak_CAF1 65720 115 - 1 ACCACAAGCUCAUCAUCGUCGGCGGAUGAGGAAAAGCGGCGAACAAGCCGCGGAAUUGCGUUUGCCGGC----GUAUGUAUGUACGUAUGUGUGAAUGUGCACUUGUAGUUGUUACUGU ((.(((((.....(((((((((((((((.......(((((......))))).......)))))))))))----).)))..(((((((........)))))))))))).))......... ( -42.74) >consensus ACCACAAGCUCAUCAUCGUCGGCGGAUGAGGAAAAGCGGCGAACAAGCCGCGGAAUUGCGUUUGCCGGC____GUAUGUAUGUAUG_AG________GUGCACUUGUAGUUGUUACUGU ...(((((.........(((((((((((.......(((((......))))).......))))))))))).......(((....................))))))))............ (-19.49 = -20.44 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:59 2006