Locus 8412

Sequence ID 3R_DroMel_CAF1
Location 22,412,880 – 22,412,986
Length 106
Max. P 0.761734
window13545

overview

Window 5

Location 22,412,880 – 22,412,986
Length 106
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 83.63
Mean single sequence MFE -32.26
Consensus MFE -24.80
Energy contribution -25.72
Covariance contribution 0.92
Combinations/Pair 1.15
Mean z-score -1.80
Structure conservation index 0.77
SVM decision value 0.50
SVM RNA-class probability 0.761734
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22412880 106 - 27905053
GCCACCGAUGGCAAUUGGUUGCAUGACGGUCUACC---CAAGGUGGAUCGAUUUUUGAAGAGGAAUAAAUCUAAAAUCGCAUUUGGCGGUCGGAUAUUCCUCGACAUUU
((.((((((....)))))).))....(((((((((---...))))))))).....((..((((((((..(((...(((((.....))))).)))))))))))..))... ( -38.50)
>DroSec_CAF1 46446 102 - 1
GCCACCGAUAGCAAGUGGUUGCAUGGCGGUCUACC---GGAGGUGGAUCGAUUUUUGAAGAGGAAUAAAUCUAAAAUCGCAUUUGGCGG----CUAUUCCUCGAUAUUU
(((.((((..((((....))))...((((((((((---...))))))))((((((...(((........)))))))))))..)))).))----)............... ( -29.60)
>DroSim_CAF1 43293 102 - 1
GCCACCGAUAGCAAGUGGUUGCAUGGCGGUCUACC---GGGGGUGGAUCGAUUUUUGAAGAGGAAUAAAUCUAAAAUCGCAUUUGGCGA----CUAUUCCUCGAUAUUU
((.((((........)))).))....(((((((((---...))))))))).........((((((((.........((((.....))))----.))))))))....... ( -30.00)
>DroEre_CAF1 44635 109 - 1
ACCACCGAAGGCAAGUGGUUGGAUGGCGGUCUACCGCCGGAGGUGGAUCGAUUUUUGAAGUGGAAUAAAUCUAAAAUCGCAUUUUGCGGAGGGCUAUUCCUCUAUAUUU
.(((((....)...))))(..((...(((((((((......)))))))))...))..)((.((((((..(((....((((.....)))))))..)))))).))...... ( -33.90)
>DroYak_CAF1 43268 96 - 1
ACCACCGAAGGCAAGUGGUUGGAUGGCGGUCCACCACUGGAGGUGGAUCGAUUUUUGGAGAGGAAUAAAUCUAAUCUCGCUAU------------A-UUCUCGAUAUUU
.(((((.....(.((((((.((((....)))))))))).).)))))(((((....(((.((((...........)))).))).------------.-...))))).... ( -29.30)
>consensus
GCCACCGAUGGCAAGUGGUUGCAUGGCGGUCUACC___GGAGGUGGAUCGAUUUUUGAAGAGGAAUAAAUCUAAAAUCGCAUUUGGCGG____CUAUUCCUCGAUAUUU
(((((.........))))).......(((((((((......))))))))).........((((((((.........((((.....)))).....))))))))....... (-24.80 = -25.72 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:51 2006