Locus 8411

Sequence ID 3R_DroMel_CAF1
Location 22,412,374 – 22,412,470
Length 96
Max. P 0.805506
window13544

overview

Window 4

Location 22,412,374 – 22,412,470
Length 96
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 82.93
Mean single sequence MFE -42.32
Consensus MFE -31.58
Energy contribution -33.20
Covariance contribution 1.62
Combinations/Pair 1.33
Mean z-score -2.27
Structure conservation index 0.75
SVM decision value 0.63
SVM RNA-class probability 0.805506
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22412374 96 + 27905053
CGCCAGUGGCCCAAAAGCC---UCAUGGCCUGAGGGGCAUGGCCAGUUUCAAGUUGCGCUCCCAAUCCCAGCCGCAGCUGGAUGGGGCGUGGCAACAGC---
.((((...((((....(((---....))).....)))).)))).........((..(((.((((...(((((....))))).)))))))..))......--- ( -45.20)
>DroSim_CAF1 42850 96 + 1
CGCCAGUGGCCCAAAAGCC---CCAUGGCCUGAGGGGCAUGGCCAGUUUCAAGCUGCGCUCCCAAUCCCAGCCGCAGCUGGAGGGGGCGUGGCAACAGC---
.((((...((((....(((---....))).....)))).)))).........((..(((((((....(((((....))))).)))))))..))......--- ( -47.50)
>DroEre_CAF1 44126 96 + 1
CGCCAGUGGCCCAAAAGCC---GCAUGGCCUGAGGGGCAUGGCCAGUUUCAAGCUGCGUUCCCAAUCCCAGCCGCAGCUGGAGGGGGCGUGGCAACAGC---
.(((((((((......)))---)).))))(((.(..((.......))..)..((..(((((((....(((((....))))).)))))))..))..))).--- ( -46.00)
>DroWil_CAF1 47959 96 + 1
-ACCGGUGGCCCAAAAACCAACCCAUGGUCUACGUGGCUUGGCCAGUUUCAAGCUACGCUCACAAUCCCAGCCACAAUUGGAAG-----UAGCAACAACACC
-.((.(((((......((((.....))))...((((((((((......))))))))))............)))))....))...-----............. ( -25.70)
>DroYak_CAF1 42797 96 + 1
CGCCCGUGGCCCAAAAGCC---ACAUGGCCUGAGGGGCAUGGCCAGUUUCAAGCUGCGCUCCCAAUCCCAGCCGCAGCUGGAGGGGGCGUGGCAACAGC---
.(.(((((.(((..(.(((---....))).)..))).))))).)........((..(((((((....(((((....))))).)))))))..))......--- ( -48.00)
>DroAna_CAF1 49544 96 + 1
CGCCGGUGGCCUACAAGCC---GCAUGGCUUACGGGGCCUGGCUAGUUUCAAGCUCCGCUCCCAGUCGCAACCGCAAUUGGAGGGGUCAUGGGUGCAGC---
((((.(((((((..(((((---....))))).((((((.(((......))).))))))((((.(((.((....)).)))))))))))))).))))....--- ( -41.50)
>consensus
CGCCAGUGGCCCAAAAGCC___CCAUGGCCUGAGGGGCAUGGCCAGUUUCAAGCUGCGCUCCCAAUCCCAGCCGCAGCUGGAGGGGGCGUGGCAACAGC___
.((((...((((....(((.......))).....)))).)))).........(((((((((((....(((((....))))).)))))))))))......... (-31.58 = -33.20 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:50 2006