Locus 8409

Sequence ID 3R_DroMel_CAF1
Location 22,401,851 – 22,401,942
Length 91
Max. P 0.999914
window13540

overview

Window 0

Location 22,401,851 – 22,401,942
Length 91
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 95.81
Mean single sequence MFE -24.64
Consensus MFE -22.94
Energy contribution -23.02
Covariance contribution 0.08
Combinations/Pair 1.04
Mean z-score -2.79
Structure conservation index 0.93
SVM decision value 4.52
SVM RNA-class probability 0.999914
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22401851 91 - 27905053
----AAAAAUAUGUUGGUUUUUGUAAAUUUUGGUUUCACUUUUGAUGAUGGGC-UAUGAAGCCAUCGUUAGAUCUAGAACUAAGCUAACGUGCCUA
----.....(((((((((...........((((((..(..(((((((((((.(-(....)))))))))))))..)..))))))))))))))).... ( -25.00)
>DroSec_CAF1 35504 91 - 1
----AAAAAUAUGUUGGUUUUUGUAAAUUUUGGUUUCACUUUUGAUGAUGGGC-UAUGAAGCCAUCGUUAGAUCUAGAACUAAGCUAACGUGCCUA
----.....(((((((((...........((((((..(..(((((((((((.(-(....)))))))))))))..)..))))))))))))))).... ( -25.00)
>DroSim_CAF1 31870 91 - 1
----AAAAAUAUGUUGGUUUUUGUAAAUUUUGGUUUCACUUUUGAUGAUGGGC-UAUGAAGCCAUCGUUAGAUCUAGAACUAAGCUAACGUGCCUA
----.....(((((((((...........((((((..(..(((((((((((.(-(....)))))))))))))..)..))))))))))))))).... ( -25.00)
>DroEre_CAF1 33722 95 - 1
AAACAAAAAUAUGUUGGUUUUUGUAAAUUUUGGUUUCACUUUUAAUGAUGGGC-UAUGGAGCCAUCGUUAGAUCUAGAACUAAGCUAACGUGCCUA
.........(((((((((...........((((((..(..(((((((((((.(-(....)))))))))))))..)..))))))))))))))).... ( -25.00)
>DroYak_CAF1 32077 92 - 1
----AAAAAUAUGUUGGUUUUUGUAAAUUUUGGUUUCACUUUUGAUGAUGGCCUUAUGUAGCCAUCGUAAGAUCUAGAACUAAGCUAACGUGCCUA
----.....(((((((((...........((((((..(..(((.((((((((........)))))))).)))..)..))))))))))))))).... ( -23.20)
>consensus
____AAAAAUAUGUUGGUUUUUGUAAAUUUUGGUUUCACUUUUGAUGAUGGGC_UAUGAAGCCAUCGUUAGAUCUAGAACUAAGCUAACGUGCCUA
.........(((((((((...........((((((..(..(((((((((((..........)))))))))))..)..))))))))))))))).... (-22.94 = -23.02 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:46 2006