| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,398,152 – 22,398,248 |
| Length | 96 |
| Max. P | 0.707070 |
| Location | 22,398,152 – 22,398,248 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 88.22 |
| Mean single sequence MFE | -26.90 |
| Consensus MFE | -20.34 |
| Energy contribution | -21.23 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.06 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22398152 96 - 27905053 CAAACCAACAUUGCCAUUCACUCAAUGUACCAUUAUUGAAUUUGGUAAGUUGAGUGGGGUAUUCAGAAAAUUUGAAUUUCUUUGCUUA----CAGACCCA ..................((((((((.(((((..........))))).))))))))(((((((((((...)))))))....(((....----))))))). ( -23.60) >DroSec_CAF1 31821 96 - 1 CAAACCAACAUUGCCAUUCACUCAAUGUACCAUUAUUGAGUUUGGUAAGUUGAGUGGGGUAUUCAGCAAAAUUGAAUUUCUUUGCUUA----CAGACCCA ...((((((.((((((...((((((((......)))))))).)))))))))).)).((((....((((((..........))))))..----...)))). ( -30.30) >DroSim_CAF1 28142 96 - 1 CAAACCAACAUUGCCAUUCACUCAAUGUACCAUUAUUGAGUUUGGUAAGUUGAGUGGGGUAUUCAGCAAAUUUGAAUUUCUUUGCUUA----CAGACCCA ...((((((.((((((...((((((((......)))))))).)))))))))).)).((((....((((((..........))))))..----...)))). ( -30.10) >DroEre_CAF1 30044 95 - 1 CAAACCGAAAU-GGCAUUCACUCAAUGUACCAUUAUUGAGUUUGGUAAGUUGAGUGGGGUAUUCAGAAAAUUUGAAUUUCUCUGCUUG----CAGACCCA ...........-......((((((((.(((((..........))))).))))))))(((((((((((...)))))))....(((....----))))))). ( -27.10) >DroYak_CAF1 28330 100 - 1 CAAACCGACAUUGCCAUUCACUCAAUGUACCAUUAUUGAGUUUGGUAAGUUGAGUGGGGUAUUCAGAAAAUUUGAAUUUCUUUGCUUGCUUACAGACCCA .....((((.((((((...((((((((......)))))))).))))))))))((..(((.(((((((...)))))))..)))..)).............. ( -27.30) >DroAna_CAF1 35183 88 - 1 CAGCCCGACAUUGUCAUUUAUUCAAUCUGCCAUUAUUGAGUUUGGUAAGUUGAGUGGGGUAUUCAGAAGUUUUG---UUCUUUGCCC---------CCCG ......(((...)))....((((((..(((((..........)))))..))))))((((((...((((......---)))).)))))---------)... ( -23.00) >consensus CAAACCAACAUUGCCAUUCACUCAAUGUACCAUUAUUGAGUUUGGUAAGUUGAGUGGGGUAUUCAGAAAAUUUGAAUUUCUUUGCUUA____CAGACCCA .....((((.((((((...((((((((......)))))))).))))))))))((..(((.((((((.....))))))..)))..)).............. (-20.34 = -21.23 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:45 2006