| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,392,711 – 22,392,805 |
| Length | 94 |
| Max. P | 0.857913 |
| Location | 22,392,711 – 22,392,805 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 76.88 |
| Mean single sequence MFE | -30.35 |
| Consensus MFE | -14.79 |
| Energy contribution | -15.27 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.857913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22392711 94 + 27905053 CCACACCCAGUGCAGCAACCAAUCGUUGGUGUAAAUUCCAAGCAACCAGUGGUUGUGGGUGUAGUCACUCCAACUACGACGACAGUCGCCCCAA ..((((((..((((.((((.....)))).))))........((((((...))))))))))))..............((((....))))...... ( -28.60) >DroVir_CAF1 82235 91 + 1 GCGCAGCCAGUACACAAACCAGCCGCAGUGGUGAAUUCCAAAC---CUGUAACGGUUGGUGCAAUUACACCAACACCAACUGCAGCUGCGCCAC (((((((..((......)).....(((((((((.......(((---(......))))((((......))))..)))).))))).)))))))... ( -34.90) >DroSec_CAF1 26401 94 + 1 GCACACCCAGUGCAGCAACCAAUCGUUGGUGUAAAUUCCAAGCAACCAGUGGUUGUGGGUGUAGUCAGUCCAACCACGACGACAGUCGCCCCAA ((((.....)))).(((((((...((((.(..........).))))...)))))))(((((..(((.(((.......))))))...)))))... ( -30.90) >DroSim_CAF1 22400 94 + 1 GCACACCCAGUGCAGCAACCGAUCGUUGGUGUAAAUUCCAAGCAACCAGUGGUUGUGGGUGUAGUCACUCCAACCACGACGACAGUCGCCCCAA ((((.....)))).((.((.(.((((((((((.........)).))).(((((((.(((((....)))))))))))))))))).)).))..... ( -33.10) >DroYak_CAF1 22708 91 + 1 GCACACCCAGUGCAGCAACCAAUCGUUGGUGUAAAUUCCAAGCAACCAGUGGCUGUGGGUGUAGUCACUCCAACCCCGACGAUAG---CCCCAG ((((.....))))........((((((((.((........(((........))).((((((....))).))))).))))))))..---...... ( -24.90) >DroAna_CAF1 29633 91 + 1 GCUCAGCUGGUACAACAACCAGCCGUUGGUGUAAAUUCCACACAGCCGGCGGUCGGUGGUGUAGUUUCCCCAACAGC---CACAGUCGCACCAC ((...((((((......)))))).(((((.(.(((((.(((...((((.....)))).))).))))).))))))...---.......))..... ( -29.70) >consensus GCACACCCAGUGCAGCAACCAAUCGUUGGUGUAAAUUCCAAGCAACCAGUGGUUGUGGGUGUAGUCACUCCAACCACGACGACAGUCGCCCCAA ..(((((((((......))(((((((((((((.........)).))))))))))))))))))................................ (-14.79 = -15.27 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:44 2006