Locus 8404

Sequence ID 3R_DroMel_CAF1
Location 22,375,225 – 22,375,315
Length 90
Max. P 0.649789
window13534

overview

Window 4

Location 22,375,225 – 22,375,315
Length 90
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 71.74
Mean single sequence MFE -15.37
Consensus MFE -6.60
Energy contribution -7.60
Covariance contribution 1.00
Combinations/Pair 1.07
Mean z-score -1.80
Structure conservation index 0.43
SVM decision value 0.24
SVM RNA-class probability 0.649789
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22375225 90 - 27905053
CAUUUUGAUUUAGUUUUUGUUUAAUGCUAUUAAUUAUACAAUUUCU------UCUCCUCCUCCGACGGACUGUCCGU----CAGUCAGUCAGUCCGAAAC
......((...((...((((.((((.......)))).))))...))------..)).........(((((((.(.(.----....).).))))))).... ( -15.80)
>DroGri_CAF1 51621 72 - 1
---UUUGAUAUAGUUUUUGUUUAAUCCCGUUAAUUAAACAAUCAUU------GCUUC---UCACACACACCAUGUGU----U--------UGUAUG----
---...((..((((..(((((((((.......)))))))))..)))------)..))---..(((.((((...))))----.--------)))...---- ( -12.00)
>DroSec_CAF1 16271 100 - 1
CAUUUUGAUUUAGUUUUUGUUUAAUGCUAUUAAUUAUACAAUUCCUUCACCUUCUCCUCCUCCGUCGGACUGUCCGUACGUCAGUCAGUCAGUCCGACAC
.....(((...((...((((.((((.......)))).))))...)))))..............(((((((((.(.(.((....))).).))))))))).. ( -21.90)
>DroSim_CAF1 11844 94 - 1
CAUUUUGAUUUAGUUUUUGUUUAAUGCUAUUAAUUAUACAAUUCCU------UCUCCACCUCCGACGGACUGUCCGUCAGUCAGUCAGUCAGUCCGACAC
....((((((......((((.((((.......)))).)))).....------...........(((((.....)))))))))))...(((.....))).. ( -16.70)
>DroEre_CAF1 12113 79 - 1
CAUUUUGAUUUAGUUUUUGUUUAAUGCUAUUAAUUAUACAAUUCCA---CCUCCU------CCAACUGACGGUCCGU------------CAGUCCGGCAC
................((((.((((.......)))).)))).....---......------((.(((((((...)))------------))))..))... ( -11.80)
>DroYak_CAF1 12271 85 - 1
CAUUUUGAUUUAGUUUUUGUUUAAUGCUAUUAAUUAUACCAUUCCA---CCUCCUUCUCCUGCGACUGACUGUUCGU------------CAGUCCGGCAC
.....(((((((((.((.....)).))))..)))))..........---..........(((.(((((((.....))------------))))))))... ( -14.00)
>consensus
CAUUUUGAUUUAGUUUUUGUUUAAUGCUAUUAAUUAUACAAUUCCU______UCUCCUCCUCCGACGGACUGUCCGU____C_______CAGUCCGACAC
................((((.((((.......)))).))))........................(((((((.................))))))).... ( -6.60 =  -7.60 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:40 2006