Locus 8403

Sequence ID 3R_DroMel_CAF1
Location 22,375,109 – 22,375,200
Length 91
Max. P 0.500000
window13533

overview

Window 3

Location 22,375,109 – 22,375,200
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 85.01
Mean single sequence MFE -26.82
Consensus MFE -17.66
Energy contribution -20.98
Covariance contribution 3.32
Combinations/Pair 1.07
Mean z-score -1.71
Structure conservation index 0.66
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22375109 91 + 27905053
UGUAGGAUGGUCGCCAAACAGCGAUUGUUGUUGGCCCAAAGUCAAAGCGGGCCGCGAGCGACCGCCAAGUGAUGGGAACAUUUCAAUAUAC
....((.((((((((.((((((....))))))(((((...........)))))..).)))))))))..(.((((....)))).)....... ( -33.70)
>DroSec_CAF1 16155 91 + 1
CGUAGGAAGUUCGCCAAACAGCGAUUGUUGUUGGCCCAAAGUCAAAGCGGGCCGAUAGCGAACGCCAAGUGAUGGGAACAUUUCAAUGUAC
(((.((((((((.(((.((.(((.(((((((((((((...........))))))))))))).)))...))..))))))).)))).)))... ( -35.50)
>DroSim_CAF1 11728 91 + 1
UGUAGGAAGUUCGCCAAACAGCGAUUGUUGUUGGCCCAAAGUCAAAGCGGGCCGAUAGAGACCGCCAAGUGAUGGGAACAUUUCAAUGUAC
....((((((((.(((.((.(((.((.((((((((((...........)))))))))).)).)))...))..))))))).))))....... ( -29.50)
>DroEre_CAF1 12000 88 + 1
UGUAGGAAGUUCGCCAAACAGCGAUUG---UUGGCCCAAAGUCAAAGCGAGCCGAGAGCAACCGCCAAGUGAUGGGAACAUUUCAAUGUAC
....((((((((.(((.((.(((.(((---(((((.(...........).))))...)))).)))...))..))))))).))))....... ( -20.00)
>DroYak_CAF1 12173 73 + 1
UGUAGGAAGUUAGCCAAAUGGCGAUGG---UUGGCCCAAA---------------GAGCAACCGCCAAGUGAUGGGAACAUUUCAAUGUAC
....((......(((....)))...((---(((.......---------------...))))).))..(.((((....)))).)....... ( -15.40)
>consensus
UGUAGGAAGUUCGCCAAACAGCGAUUGUUGUUGGCCCAAAGUCAAAGCGGGCCGAGAGCGACCGCCAAGUGAUGGGAACAUUUCAAUGUAC
....((((((((.(((.((.(((.(((((.(((((((...........))))))).))))).)))...))..))))))).))))....... (-17.66 = -20.98 +   3.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:39 2006