| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,373,044 – 22,373,146 |
| Length | 102 |
| Max. P | 0.576682 |
| Location | 22,373,044 – 22,373,146 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 82.70 |
| Mean single sequence MFE | -31.43 |
| Consensus MFE | -15.16 |
| Energy contribution | -16.75 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.99 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576682 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22373044 102 - 27905053 -------GAACGCCCAUUGUUGUGGCAAACUGCAGCUGGCAAAGCAGCC---GCAUACAAAAUCGAGCUGGCUAAUUUGAGCCAG--CAUAGAAAA-AGUGCUACAUGAAAAUGG -------......(((((..(((((((...(((.((((......)))).---)))...........(((((((......))))))--)........-..)))))))....))))) ( -36.30) >DroSec_CAF1 14127 99 - 1 -------GAACGUCCAUUGUUGUGGCAAACUGCAGCUGGCAAAG---CC---GCAUACAAAAUCGAGCUGGCUAAUUUGAGCCAG--CAUACAAAA-AGUGCUACAUGAAAAUGG -------......(((((..(((((((...(((.(((.....))---).---)))...........(((((((......))))))--)........-..)))))))....))))) ( -33.80) >DroSim_CAF1 9670 102 - 1 -------GAACGUCCAUUGUUGUGGCAAACUGCAGCUGGCAAAGCAGCC---GCAUACAAAAUCGAGCUGGCUAAUUUGAGCCAG--CAUACAAAA-AGUGCUACAUGAAAAUGA -------.......((((..(((((((...(((.((((......)))).---)))...........(((((((......))))))--)........-..)))))))....)))). ( -34.10) >DroEre_CAF1 9826 102 - 1 -------GAACGUCCAUUGUUGUGGCAAACUGCAGCUGGCAAAGCCGUC---GCAUACAAAAUCGAGCUGGCUAAUUUGAGCCAA--CUUAGAAAA-AGUGCUACAUGAAAAUGG -------......(((((..(((((((...(((.((.(((...))))).---))).......(((((.(((((......))))).--))).))...-..)))))))....))))) ( -29.40) >DroYak_CAF1 10072 103 - 1 -------GAACGUCCAUUGUUGUGGCAAACUGCAGCUGGCAAAGCAGCC---GCAUACCAAAUCGAGCUGGCUAAUUUGAGCCAA--CAUAGAAAAUAAAGCGACAAGAAAAUGA -------.......((((.((((.((....(((.((((......)))).---)))...........(.(((((......))))).--)............)).))))...)))). ( -25.20) >DroAna_CAF1 18449 112 - 1 CUGGCAUGGAUGGCCAUUGUUGUGGCA-ACAGCUGCUGGCAAAUCAGCCGCCGAAUACA-AAUCCAGCCAGCUAAUUUGUGCGGAAAAUGAGAAAA-UAUAAAAAAUAAAACUGC (((((.(((((.(((((....))))).-.(.((.(((((....))))).)).)......-.)))))))))).........((((............-..............)))) ( -29.77) >consensus _______GAACGUCCAUUGUUGUGGCAAACUGCAGCUGGCAAAGCAGCC___GCAUACAAAAUCGAGCUGGCUAAUUUGAGCCAA__CAUAGAAAA_AGUGCUACAUGAAAAUGG ..............((((..(((((((...(((....(((......)))...))).............(((((......)))))...............)))))))....)))). (-15.16 = -16.75 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:37 2006