Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,874,183 – 2,874,301 |
Length | 118 |
Max. P | 0.849161 |
Location | 2,874,183 – 2,874,301 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.60 |
Mean single sequence MFE | -41.45 |
Consensus MFE | -33.01 |
Energy contribution | -33.33 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.14 |
Mean z-score | -1.77 |
Structure conservation index | 0.80 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2874183 118 + 27905053 UUUGGCUGCAUUUGCGGCGUGUUUGC--AGAUUGAAUGGAGCACUUCCGGCAUCCGGUUGCACUUUUUUGCCAUUGCUGCACUUUCGUCCUGUGAAAUGCAGCGACAUCGACGGCGAAUA ....(((((....))))).(((((((--...((((.((..(((...((((...)))).)))............((((((((.(((((.....)))))))))))))))))))..))))))) ( -38.90) >DroSec_CAF1 5323 118 + 1 UUUCGCUGCAUUUGCAGCGUGUUUGC--AGAUUGAAUGGAGCACUUCCGGAAUCCGGUUGCACUUUUUUGCCAUUGCUGCACUUUCGUCCUGUGAGAUGCAGCGACAUCGACGGCGAAUA ...((((((....))))))(((((((--...((((.((..(((...((((...)))).)))............((((((((.(((((.....)))))))))))))))))))..))))))) ( -41.10) >DroSim_CAF1 5676 120 + 1 UUUCGCUGCAUUUGCGGCGUGUUUGCUCGGAUUGAAUGGAGCACUUCCGGCAUCCGGUUGCACUUUUUUUCCAUUGGAGCACUUUCGUCCUGUGAGAUGCAGCGACAUGGACGGCGAAUA ..(((((((((((((((((....(((((.(((.(((.((.(((...((((...)))).))).))....))).))).)))))....)).)).)).)))))))))))............... ( -42.50) >DroEre_CAF1 6276 117 + 1 UUUCGCUGCGUUUGCGGCGUGUUUGC--AGAUUGAAUGGAGCACUUCCGACAUCCGGUUGCACUUU-UUGCCAUUGCUGCACUUUCGUCCUGCGAGAUGCAGCGGCUUCGGCUGCGUAUA ...((((((....))))))..(((((--((..((((((.((((...(((.....)))..(((....-.)))...)))).))..))))..)))))))((((.(((((....))))))))). ( -43.30) >consensus UUUCGCUGCAUUUGCGGCGUGUUUGC__AGAUUGAAUGGAGCACUUCCGGCAUCCGGUUGCACUUUUUUGCCAUUGCUGCACUUUCGUCCUGUGAGAUGCAGCGACAUCGACGGCGAAUA ...((((((....))))))(((((((...(.((((.....(((...(((.....))).)))............((((((((.(((((.....)))))))))))))..))))).))))))) (-33.01 = -33.33 + 0.31)
Location | 2,874,183 – 2,874,301 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.60 |
Mean single sequence MFE | -37.45 |
Consensus MFE | -28.96 |
Energy contribution | -29.77 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.04 |
Mean z-score | -2.33 |
Structure conservation index | 0.77 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.849161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2874183 118 - 27905053 UAUUCGCCGUCGAUGUCGCUGCAUUUCACAGGACGAAAGUGCAGCAAUGGCAAAAAAGUGCAACCGGAUGCCGGAAGUGCUCCAUUCAAUCU--GCAAACACGCCGCAAAUGCAGCCAAA .................(((((((((....((.((....(((((.(((((......((..(..((((...))))..)..)))))))....))--)))....))))..))))))))).... ( -35.90) >DroSec_CAF1 5323 118 - 1 UAUUCGCCGUCGAUGUCGCUGCAUCUCACAGGACGAAAGUGCAGCAAUGGCAAAAAAGUGCAACCGGAUUCCGGAAGUGCUCCAUUCAAUCU--GCAAACACGCUGCAAAUGCAGCGAAA ..((((((((.(((((....)))))..)).)).))))..(((((.(((((......((..(..((((...))))..)..)))))))....))--)))....((((((....))))))... ( -39.50) >DroSim_CAF1 5676 120 - 1 UAUUCGCCGUCCAUGUCGCUGCAUCUCACAGGACGAAAGUGCUCCAAUGGAAAAAAAGUGCAACCGGAUGCCGGAAGUGCUCCAUUCAAUCCGAGCAAACACGCCGCAAAUGCAGCGAAA ...............(((((((((......((.((....(((((.....(((....((..(..((((...))))..)..))...))).....)))))....))))....))))))))).. ( -37.40) >DroEre_CAF1 6276 117 - 1 UAUACGCAGCCGAAGCCGCUGCAUCUCGCAGGACGAAAGUGCAGCAAUGGCAA-AAAGUGCAACCGGAUGUCGGAAGUGCUCCAUUCAAUCU--GCAAACACGCCGCAAACGCAGCGAAA .....((((..(((((((((((((.(((.....)))..)))))))...)))..-..((..(..(((.....)))..)..))...)))...))--)).....(((.((....)).)))... ( -37.00) >consensus UAUUCGCCGUCGAUGUCGCUGCAUCUCACAGGACGAAAGUGCAGCAAUGGCAAAAAAGUGCAACCGGAUGCCGGAAGUGCUCCAUUCAAUCU__GCAAACACGCCGCAAAUGCAGCGAAA ...............(((((((((......(.((....)).).(((((((......((..(..((((...))))..)..)))))))........((......)).))..))))))))).. (-28.96 = -29.77 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:27 2006