Locus 84

Sequence ID 3R_DroMel_CAF1
Location 517,910 – 518,004
Length 94
Max. P 0.532833
window144

overview

Window 4

Location 517,910 – 518,004
Length 94
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.93
Mean single sequence MFE -25.42
Consensus MFE -15.39
Energy contribution -16.97
Covariance contribution 1.58
Combinations/Pair 1.15
Mean z-score -1.84
Structure conservation index 0.61
SVM decision value -0.00
SVM RNA-class probability 0.532833
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 517910 94 + 27905053
GAGCGAAAGUGCAUGUCUGACUUAUCGAUACUAAAAUUUUAAUGAACUUAUAAGUUUGCGUGUCGAAUUGUCAAACAGUUCGCGCUGGGCGUGC--------
..((....))(((((((((((...(((((((..((((((............))))))..)))))))...))))..((((....)))))))))))-------- ( -28.20)
>DroSec_CAF1 44484 94 + 1
GAGCGAAAGUGCAUGUCUGACUUAUCGAUACUAAAAUUUUAAUGAACUUAUAAUUUUGCAUGUCGAAUUGUCAAACAGUUCGCGCUGGGCGUGC--------
..((....))(((((((((((...((((((.(((((((.(((.....))).)))))))..))))))...))))..((((....)))))))))))-------- ( -26.60)
>DroSim_CAF1 44595 94 + 1
CAGCGAAAGUGCAUGUCUGACUUAUCGAUACUAAAAUUUUAAUGAACUUAUAAUUUUGCGUGUCGAAUUGUCAAACAGUUCGCGCUGGGCGUGC--------
..((....))(((((((((((...((((((((((((((.(((.....))).))))))).)))))))...))))..((((....)))))))))))-------- ( -30.80)
>DroEre_CAF1 50178 94 + 1
GAGCGAAAGUGCAUUGCUGACUAAUCGAUAUUAAAAUGUUAAUGAACUGAACUUUUUGCGUGUCGAAUUGUCAAACAGUUCGCGCUGGGCGUGC--------
..(((..(((((((((.((((...((((((((((((.(((.........))).))))).)))))))...))))..))))..)))))...)))..-------- ( -24.00)
>DroYak_CAF1 62383 78 + 1
----------------CUGACUUAUCGAUAUAAAAAUGUUAAUGACCUGAACAUUUUGCGUGUCGAAUUGUCACACAGUUCGCGCUGGGAGUGC--------
----------------.((((...(((((((.((((((((.........))))))))..)))))))...))))........((((.....))))-------- ( -20.60)
>DroAna_CAF1 61417 102 + 1
GAGCGAAAGUGCAUUUGGGUCUUAUCGAUAUUGAAAUGUUAAUGAACUGAAAAUUUUGCGUGUCGAAUUGUCGAACAGUUCGCGCUGGGUAUAUGGGUAUAU
..((((((.....(((.(((.((((..((((....))))..))))))).))).))))))(((.(((((((.....))))))))))................. ( -22.30)
>consensus
GAGCGAAAGUGCAUGUCUGACUUAUCGAUACUAAAAUGUUAAUGAACUGAAAAUUUUGCGUGUCGAAUUGUCAAACAGUUCGCGCUGGGCGUGC________
..(((..(((((..............((((((((((((.............))))))).)))))((((((.....)))))))))))...))).......... (-15.39 = -16.97 +   1.58) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:38 2006