Locus 8399

Sequence ID 3R_DroMel_CAF1
Location 22,366,186 – 22,366,284
Length 98
Max. P 0.578921
window13529

overview

Window 9

Location 22,366,186 – 22,366,284
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 76.35
Mean single sequence MFE -19.41
Consensus MFE -14.40
Energy contribution -14.15
Covariance contribution -0.25
Combinations/Pair 1.17
Mean z-score -0.85
Structure conservation index 0.74
SVM decision value 0.09
SVM RNA-class probability 0.578921
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22366186 98 + 27905053
GUAAUCACCUUAUCGCCUGGCAUUGCCCCAAUGGGCCUGAGGUUCAACCUGCUUAGCAGACCGACCGCCCGCCCGCCUACCACCAAGCUACUUACCUU
((((....(((.......(((((((...))))((((....((((....((((...))))...))))....))))))).......)))....))))... ( -21.14)
>DroSec_CAF1 7395 75 + 1
GUAAUCACCUUAUCGCCUGGCAUUGUCCCAAUGGGCCUGAGGUUCAACCUGCUUAGCAGACCGCCCG----CCCGCCAA-------------------
.................((((((((...))))((((....(((.....((((...)))))))....)----))))))).------------------- ( -18.90)
>DroSim_CAF1 2858 79 + 1
GUAAUCACCUUAUCGCCUGGCAUUGCCCCAAUGGGCCUGAGGUUCAACCUGCUUAGCAGACCGCCCGCCCGCCCGCCUA-------------------
..............((..(((((((...))))((((....(((.....((((...)))))))....))))))).))...------------------- ( -18.70)
>DroEre_CAF1 2966 89 + 1
GUAAUCACCUUAUCGCCUGGCAUUGCCCCAAUGGGCCUGAGGUUCAACCUGCUUAGCAGACCAACCGCCUAC-CGCCAA-------U-CACCUACCCU
.................((((...((((....))))....((((....((((...))))...))))......-.)))).-------.-.......... ( -19.40)
>DroYak_CAF1 3005 76 + 1
GUAAUCACCUUAUCGCCUGGCAUUGCCCCAAUGGGCCUGAGGUUCAACCUGCUUAGCAGACCAACC----------------------UACCUACCUU
(((...((((((..(((((((...))).....)))).)))))).....((((...)))).......----------------------)))....... ( -15.80)
>DroAna_CAF1 12502 78 + 1
GUAAUCACCUUAUCGCCUGGCAUUGCCCCAAUGGGCCUGGGGUUCAACCCGCUUACCUUUCCAGGCCUCUGC--------------------UUCCUU
..............((((((....((((....))))..(((......)))..........))))))......--------------------...... ( -22.50)
>consensus
GUAAUCACCUUAUCGCCUGGCAUUGCCCCAAUGGGCCUGAGGUUCAACCUGCUUAGCAGACCAACCGCC_GC_CGCC_A_____________UACCUU
..............((..(((...((((....))))...(((.....))))))..))......................................... (-14.40 = -14.15 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:35 2006