Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,362,941 – 22,363,056 |
Length | 115 |
Max. P | 0.930286 |
Location | 22,362,941 – 22,363,056 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 87.79 |
Mean single sequence MFE | -28.43 |
Consensus MFE | -20.54 |
Energy contribution | -20.36 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -2.69 |
Structure conservation index | 0.72 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.930286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22362941 115 + 27905053 CAAAAUGGCAAGGCCAGGCAAACACAAAA--AAGAA-AAAAGUCUAUCUUACGUUUUUCCCUUGCCGUUUCACGUAGCGCAACGCCUAACGUAAUCGCAAUGCGAGAAGCAAUCAAAU ......(((((((...(.....)......--..(((-(((.((.......)).)))))))))))))(((((.(((((((..(((.....)))...)))..)))).)))))........ ( -27.30) >DroSim_CAF1 74639 113 + 1 CAAAAUGGCAAGGCCAGGCAA---CAAAA--ACGAAAAAAAGUCUAUCUUACGUUUUUCCCUUGCCGUUUCACGUAGCGCAACGCUUAACGUAAUCGCAAUGCGAGAAGCAAUCAAAU ......(((((((...(....---)((((--(((.....(((.....))).))))))).)))))))(((((((((((((...))))..))))..((((...)))))))))........ ( -30.90) >DroEre_CAF1 73461 108 + 1 CAAAAUGGCAAGGCCAGGCAA---CAAGAAAAUAAAAAAAAGGCUAUCUUACGUU-UUCCCUUGCCGUUUCACGUAGCGCAACGCCUAACGUA------AUGCGCGAAGCAAUCAAAU ..(((((((((((...(....---)..((((((...................)))-))))))))))))))...((.((((((((.....))).------.)))))...))........ ( -27.31) >DroYak_CAF1 73005 103 + 1 CAAAAUGGCAAGGCCAGGCAA---CAAGAA-----AAAAAAGUCUAUCUUACGUU-CUCCCUUGCCGUUUCACGUAGCGCAGCGCCUAACGUA------AUGCGCGAAGCAAUCAAAU ..(((((((((((...(....---).((((-----....(((.....)))...))-)).)))))))))))...((.((((((((.....))).------.)))))...))........ ( -28.20) >consensus CAAAAUGGCAAGGCCAGGCAA___CAAAA__A_GAAAAAAAGUCUAUCUUACGUU_UUCCCUUGCCGUUUCACGUAGCGCAACGCCUAACGUA______AUGCGAGAAGCAAUCAAAU ......(((((((...(((.................................)))....)))))))(((((.((((.....(((.....)))........)))).)))))........ (-20.54 = -20.36 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:32 2006