Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,360,827 – 22,360,931 |
Length | 104 |
Max. P | 0.529499 |
Location | 22,360,827 – 22,360,931 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.13 |
Mean single sequence MFE | -25.23 |
Consensus MFE | -18.31 |
Energy contribution | -18.12 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.07 |
Mean z-score | -1.45 |
Structure conservation index | 0.73 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529499 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22360827 104 + 27905053 ------CACGCAGCGUCGUCGAAAAU---------AUCGCGAAUUUACAAGCGCCGGCAAAAAUUUACUAGAGAAAUCCGCCCGCAAUUACACAGAGCGACGCAGCAAACACGUCCAAA- ------...((.((((((((......---------...((..........))((.(((((....))....((....)).))).)).........)).)))))).)).............- ( -22.40) >DroSim_CAF1 72524 113 + 1 ------CACGCAGUGUCGGCGAAAAUAUCGCAAAUAUCGCGAAUUUACAAGCGCCGGCAAAAAUUUACUCGAGAAAUCCGCCCGCAAUUGCACAGAGCGACGCAGCAAACACGUCCAAA- ------...((((((((((((.((((.((((.......)))))))).....)))))))............((....))........))))).....(.((((.........)))))...- ( -26.90) >DroEre_CAF1 71017 111 + 1 ------CACACAGCGUCGUCGAAAA--UCGCA-AUAUCGCGAAUUUACAAGCGCCGGCAAAAAUUUACUCGACAAAUCCGCCCGCAAGUGCACAGAGCGACGCAGCAAACACGUCCAAAC ------......((((((((((...--((((.-.....))))........((....))..........)))))......((.(....).)).......)))))................. ( -27.60) >DroYak_CAF1 70603 120 + 1 UAAGCGAACACAGCGUCGUCAAAAAUAUCGCAAAUAUCGCGAAUUUACAAGCGCCGGCAAAAAUUUACUCGACAAAUCCGCCCGCAAUUGCACAGAGCGACGCAGCAAACACGUCCAAAC ...(((....).((((((((.......((((.......)))).....(((..((.(((.....................))).))..)))....)).)))))).)).............. ( -24.00) >consensus ______CACACAGCGUCGUCGAAAAU_UCGCA_AUAUCGCGAAUUUACAAGCGCCGGCAAAAAUUUACUCGACAAAUCCGCCCGCAAUUGCACAGAGCGACGCAGCAAACACGUCCAAA_ ............((((((.(..................((..........))((.(((.....................))).))...........)))))))................. (-18.31 = -18.12 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:26 2006