Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,360,671 – 22,360,764 |
Length | 93 |
Max. P | 0.949895 |
Location | 22,360,671 – 22,360,764 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 97.85 |
Mean single sequence MFE | -16.78 |
Consensus MFE | -15.57 |
Energy contribution | -15.20 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.10 |
Mean z-score | -1.85 |
Structure conservation index | 0.93 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698945 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22360671 93 + 27905053 CUACCUUUGUUGUCUUUUUUGCAUUUCCGCUUUACGUUUGUGUUUCGCUCGCACUCACGCACUCAAACACACGCAAACACAGACGCACACAUA .......((((((((..(((((.....((.....))..(((((((.....((......))....))))))).)))))...))))).))).... ( -16.40) >DroSim_CAF1 72366 93 + 1 CUACCUUUGUUGUCUUUUUUGCAUUUCCGCUUUACGUUUGUGUUUCGCUCGCACUCACGCACUCAAACACACGCAAACACAGACGCACACAUA .......((((((((..(((((.....((.....))..(((((((.....((......))....))))))).)))))...))))).))).... ( -16.40) >DroEre_CAF1 70857 93 + 1 CUACCUUUGUUGUCUUUUUUGCAUUUCCGCUUUACGUUUGUGUUUCGCUCGCACUCACGCACUCAAGCACACGCAAGCACAGACGCACACAUA .......((((((((.....((......)).....((((((((...(((.((......)).....)))..))))))))..))))).))).... ( -17.60) >DroYak_CAF1 70431 93 + 1 CUACCUUUGUUGUCUUUUUUGCAUUUCCGCUUUACGUUUGUGUUUCGCUCGCACUCACGCACUCAAACACACACAAACACAGACGCACAAAUA .....((((((((((.....((......)).....((((((((.......((......))..........))))))))..))))).))))).. ( -16.73) >consensus CUACCUUUGUUGUCUUUUUUGCAUUUCCGCUUUACGUUUGUGUUUCGCUCGCACUCACGCACUCAAACACACGCAAACACAGACGCACACAUA .......((((((((.....((......)).....((.(((((((.....((......))....))))))).))......))))).))).... (-15.57 = -15.20 + -0.37)
Location | 22,360,671 – 22,360,764 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 97.85 |
Mean single sequence MFE | -27.32 |
Consensus MFE | -25.41 |
Energy contribution | -25.72 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -2.95 |
Structure conservation index | 0.93 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.949895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22360671 93 - 27905053 UAUGUGUGCGUCUGUGUUUGCGUGUGUUUGAGUGCGUGAGUGCGAGCGAAACACAAACGUAAAGCGGAAAUGCAAAAAAGACAACAAAGGUAG ....(((..((((...((((((((((((((.(..(....)..)...).))))))...((.....))...)))))))..)))).)))....... ( -27.70) >DroSim_CAF1 72366 93 - 1 UAUGUGUGCGUCUGUGUUUGCGUGUGUUUGAGUGCGUGAGUGCGAGCGAAACACAAACGUAAAGCGGAAAUGCAAAAAAGACAACAAAGGUAG ....(((..((((...((((((((((((((.(..(....)..)...).))))))...((.....))...)))))))..)))).)))....... ( -27.70) >DroEre_CAF1 70857 93 - 1 UAUGUGUGCGUCUGUGCUUGCGUGUGCUUGAGUGCGUGAGUGCGAGCGAAACACAAACGUAAAGCGGAAAUGCAAAAAAGACAACAAAGGUAG ..(((((.((..((..((..((..(......)..))..))..))..))..)))))........(((....))).................... ( -25.90) >DroYak_CAF1 70431 93 - 1 UAUUUGUGCGUCUGUGUUUGUGUGUGUUUGAGUGCGUGAGUGCGAGCGAAACACAAACGUAAAGCGGAAAUGCAAAAAAGACAACAAAGGUAG ..(((((..((((..((((((((.((((((...((....)).))))))..)))))))).....(((....))).....)))).)))))..... ( -28.00) >consensus UAUGUGUGCGUCUGUGUUUGCGUGUGUUUGAGUGCGUGAGUGCGAGCGAAACACAAACGUAAAGCGGAAAUGCAAAAAAGACAACAAAGGUAG ....(((..((((...((((((((((((((.(..(....)..)...).))))))...((.....))...)))))))..)))).)))....... (-25.41 = -25.72 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:25 2006