Locus 8391

Sequence ID 3R_DroMel_CAF1
Location 22,360,225 – 22,360,344
Length 119
Max. P 0.545647
window13516

overview

Window 6

Location 22,360,225 – 22,360,344
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.96
Mean single sequence MFE -19.62
Consensus MFE -16.05
Energy contribution -16.05
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.82
SVM decision value 0.02
SVM RNA-class probability 0.545647
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22360225 119 - 27905053
CAAAAAGGAUAUACGAAUGUAUGUAGCAAAGGAAAAACUCCAAGUACAGUAGUUGCUGCUGCUUCUUGUUCACGCAAAAGGCAAAAACGCAAAAAAGCAAA-AAAACCCAAAGGCAAAAU
......((((((((....)))))).((...(((.....)))..((.((((....)))).(((((.((((....)))).))))).....))......))...-.....))........... ( -19.90)
>DroSim_CAF1 71946 103 - 1
CAAAAAGGAUAUACGAAUGUAUGUAGCAUAGGAAAAACUCCAAGUACAGUAGUUGCUGCUGCUUCUUGUUCACGCAAAAGGCAAAAACGCAAAAAAGCA-----------------AAAU
......(((((...(((.(((.((((((..(((.....)))....((....)))))))))))))).)))))..((.....((......))......)).-----------------.... ( -17.90)
>DroEre_CAF1 70435 111 - 1
CAAAAAGGAUAUACAUAUGUAUGUAGCAAGGGAAAAACUCCAAGUACAGUAGUUGCUGCUGCUUCUUGUUCACGCAAAAGGCAA-AACGCAAAAAAA--------ACGCAAAAGCAAAAU
.................((..((.(((((((((.....)))(((((((((....)))).)))))))))))))..))....((..-...)).......--------..((....))..... ( -20.70)
>DroYak_CAF1 69976 120 - 1
CAAAAAGGAUAUACAUAUGUAUGUAGCAAGGAAAAAACGCCAAGUACAGUAGUUGCUGCUGCUUCUUGUUCACGCAAAAGGCAAAAACGCAAAAAAAAAACUCAAAGGCAAAGGCAAAAU
........((((((....)))))).((..(.......)(((.....((((....)))).(((((.((((....)))).))))).......................)))....))..... ( -20.00)
>consensus
CAAAAAGGAUAUACAAAUGUAUGUAGCAAAGGAAAAACUCCAAGUACAGUAGUUGCUGCUGCUUCUUGUUCACGCAAAAGGCAAAAACGCAAAAAAACA______ACGCAAAGGCAAAAU
........((((((....)))))).((.............((((...((((((....)))))).)))).....((.....))......)).............................. (-16.05 = -16.05 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:23 2006