Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,872,744 – 2,872,857 |
Length | 113 |
Max. P | 0.859475 |
Location | 2,872,744 – 2,872,857 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.42 |
Mean single sequence MFE | -30.69 |
Consensus MFE | -26.77 |
Energy contribution | -27.14 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.07 |
Mean z-score | -1.97 |
Structure conservation index | 0.87 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2872744 113 + 27905053 CAACAGC------AACAACAAGCUGAGGAAGAUGGUCCGGCCAGAAGUUUGGCCAACAUCUUU-UUGGCAUUUUCAGCGGUUUUGCAUUAAUUUAAAUUUCGAAUGUAAAUGAGCCAAUU ...((((------........))))(((((((((....((((((....))))))..)))))))-)).((.......))(((((((((((.............))))))...))))).... ( -29.82) >DroSec_CAF1 3944 113 + 1 CAACAGC------AACAACAAGCUGAGGAAGAUGGUCCGGCCAGAAGUUUGGCCAACAGCUUU-UUGGCAUUUUCAGCGGUUUUGCAUUAAUUUAAAUUUCGAAUGCAAAUGAGCCAAUU .....((------..(((.((((((.(((......)))((((((....))))))..)))))).-))))).........(((((((((((.............))))))...))))).... ( -32.22) >DroSim_CAF1 4323 114 + 1 CAACAGC------AACAACAAGCUGAGGAAGAUGGUCCGGCCAGAAGUUUGGCCAACAGCUUUUUUGGCAUUUUCAGCGGUUUUGCAUUAAUUUAAAUUUCGAAUGCAAAUGAGCCAAUU .......------........((((((((.........((((((....))))))....(((.....))).))))))))(((((((((((.............))))))...))))).... ( -31.22) >DroEre_CAF1 4873 119 + 1 CAACAGCAACAGCAACAUCAAGCUGAGGAAGAUGGUCCGGCCAAAAGUUUACCCAACAGCUUU-UUGGCAUUUUCAGCGGUUUUGCAUUAAUUUAAAUUUCGAAUGCAAAUGAGCCAAUU .....((....))........((((((((......))).((((((((((........))).))-)))))....)))))(((((((((((.............))))))...))))).... ( -29.52) >consensus CAACAGC______AACAACAAGCUGAGGAAGAUGGUCCGGCCAGAAGUUUGGCCAACAGCUUU_UUGGCAUUUUCAGCGGUUUUGCAUUAAUUUAAAUUUCGAAUGCAAAUGAGCCAAUU .....................((((((((.........((((((....))))))....(((.....))).))))))))(((((((((((.............))))))...))))).... (-26.77 = -27.14 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:25 2006