Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,358,962 – 22,359,062 |
Length | 100 |
Max. P | 0.922372 |
Location | 22,358,962 – 22,359,062 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.19 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -18.12 |
Energy contribution | -19.12 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.09 |
Mean z-score | -2.10 |
Structure conservation index | 0.69 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922372 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22358962 100 + 27905053 UGUACUGGCUUUUUGUGUGUGCUCGGAUUUAAGCUGCGAUAAAUUCGCAGAUU--CUACGGC----U-------------CAGAUUCUUC-AUCUGCCAUUACGCACGCAUCUCCAUAAU .....(((.....((((((((...(((......((((((.....))))))..)--))..(((----.-------------.((((.....-)))))))....))))))))...))).... ( -28.00) >DroSim_CAF1 70664 100 + 1 UGUACUGGCUUUUUGUGUGUGCUCGGAUUUAAGCUGCGAUAAAUUCGAAGAUU--CUACGGC----U-------------CAGAUUCUUC-AUCUGCCAUUACGCACGCAUCUCCAUAAU .....(((.....((((((((.(((((((((........))))))))).....--....(((----.-------------.((((.....-)))))))....))))))))...))).... ( -25.20) >DroEre_CAF1 69159 100 + 1 UGUACUGGCUUUUUGUGUGUGCUCAGACUUAAGCUGCGAUAAAUUCGCAGAUU--CUACGGC----U-------------CAGAUUCUUC-AUCUGCCAUUACGCACGCAUCUCCAUAAU .....(((.....((((((((............((((((.....))))))...--....(((----.-------------.((((.....-)))))))....))))))))...))).... ( -27.50) >DroWil_CAF1 74759 118 + 1 UCCGCUGUCCUUUUGU-UGUGGCCCUCUUGUAGCUGCGAUAAAU-CUCAGACUUUCUUUCGUUAGGUCAUCUAUUUCUGGCAGUUUCAACAAACUUCCAUUACACACGCAUCAUCAUCAU ...(((((...(((((-((..((.........))..))))))).-....(((((.........))))).........(((.(((((....))))).)))....))).))........... ( -21.20) >DroYak_CAF1 68664 100 + 1 UGUACUGGCUUUUUGUGUGUGCUUGGAUUUAAGCUGCGAUAAAUUCGCAGAUU--CUACGGC----U-------------CAGAUUCUUC-AGCUGCCAUUACGCACGCAUCUCCAUAAU .....(((.....((((((((..(((.......((((((.....))))))...--...((((----(-------------..((....))-))))))))...))))))))...))).... ( -30.00) >consensus UGUACUGGCUUUUUGUGUGUGCUCGGAUUUAAGCUGCGAUAAAUUCGCAGAUU__CUACGGC____U_____________CAGAUUCUUC_AUCUGCCAUUACGCACGCAUCUCCAUAAU .....(((.....((((((((............((((((.....))))))..............................(((((......)))))......))))))))...))).... (-18.12 = -19.12 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:20 2006