Locus 8388

Sequence ID 3R_DroMel_CAF1
Location 22,358,360 – 22,358,463
Length 103
Max. P 0.828518
window13512

overview

Window 2

Location 22,358,360 – 22,358,463
Length 103
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 89.59
Mean single sequence MFE -40.26
Consensus MFE -29.48
Energy contribution -29.96
Covariance contribution 0.48
Combinations/Pair 1.10
Mean z-score -2.20
Structure conservation index 0.73
SVM decision value 0.71
SVM RNA-class probability 0.828518
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22358360 103 + 27905053
CCGGCGCCAAUGUCAUCAGUUUGUCACCGCUCAAAUCGGAAAAUUGAUGAGGUGGUGG-----GGCAUUAACCCGUGGCUUGG-GGUGGAAAACAAUCCCAAGGGACAG-
....(((((.(.((((((((((....(((.......))).)))))))))).))))))(-----((......)))((..(((((-(((........))))))))..))..- ( -37.60)
>DroSec_CAF1 66084 104 + 1
CCGGCGCCAAUGUCAUCAGUUUGUCAACGCUCAAAUCGGGAAAUUGAUGAGGUGCUGG-----GGCAUUAACCCGUGGCUUGGGGGUGGAAAACAAUCCCAGGGGACAG-
.(((((((....((((((((((.((............)).)))))))))))))))))(-----((......)))((..((((((..((.....))..))))))..))..- ( -39.70)
>DroSim_CAF1 70071 104 + 1
CCGGCGCCAAUGUCAUCAGUUUGUCACCGCUCAAAUCGGGAAAUUGAUGAGGUGCUGG-----GGCAUUAACCCGUGGCUUGGGGGUGGAAAACAAUCCCAGGGGACAG-
.(((((((....(((((((((..((.(((.......)))))))))))))))))))))(-----((......)))((..((((((..((.....))..))))))..))..- ( -40.50)
>DroEre_CAF1 68427 108 + 1
CCGGCGCCAAUGUCAUCAGUUUGUCAACGCUCAAAUCGGGAAAUUGAUGAGGUGCUGGAGGGGGGCAUUAACUCGUGGUUUGG-GGUGGAAAACCUCCCCAGGGGACAA-
((((((((....((((((((((.((............)).))))))))))))))))))..(((........)))((..(((((-((.((....)).)))))))..))..- ( -42.10)
>DroYak_CAF1 68018 109 + 1
CCGGCGCCAAUGUCAUCAGUUUGUCACCGCUCAAGUCGGGAAAUUGAUGAGGUGCUGGGGAUGGGCAUUACCUCGUGGUUUGG-GGUGGAAAAUAUACCCCGGGGACAAC
((((((((....(((((((((..((.((((....).)))))))))))))))))))))).((.((......)))).......((-((((.......))))))(....)... ( -41.40)
>consensus
CCGGCGCCAAUGUCAUCAGUUUGUCACCGCUCAAAUCGGGAAAUUGAUGAGGUGCUGG_____GGCAUUAACCCGUGGCUUGG_GGUGGAAAACAAUCCCAGGGGACAG_
((((((((....((((((((((.((............)).))))))))))))))))))................((..(((((.(((........))))))))..))... (-29.48 = -29.96 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:19 2006