Locus 8387

Sequence ID 3R_DroMel_CAF1
Location 22,358,255 – 22,358,348
Length 93
Max. P 0.510772
window13511

overview

Window 1

Location 22,358,255 – 22,358,348
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.64
Mean single sequence MFE -24.37
Consensus MFE -18.60
Energy contribution -18.68
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -1.70
Structure conservation index 0.76
SVM decision value -0.04
SVM RNA-class probability 0.510772
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22358255 93 - 27905053
GCGGCAUGUUUGUGCGGACUAUUUAACAAAUUGAGUAUACGCACUGUUGCACGCGUAAAAUAUUUAUGCCUGUGC-----CC----------------------AAAUGUAUUAGCAUAC
((((((.....(((((...(((((((....)))))))..)))))...))).)))..........(((((..((((-----..----------------------....))))..))))). ( -26.40)
>DroSec_CAF1 65979 93 - 1
GCGGCAUGUUUGUGCGGACUAUUUAACAAAUUGAGUAUACGCACUGUUGCACGCGUAAAAUAUUUAUGCCUGUAC-----CC----------------------AAAUGUAUUAGCAUAC
((((((.....(((((...(((((((....)))))))..)))))...))).)))..........(((((..((((-----..----------------------....))))..))))). ( -26.40)
>DroSim_CAF1 69966 93 - 1
GCGGCAUGUUUGUGCGGACUAUUUAACAAAUUGAGUAUACGCACUGUUGCACGCGUAAAAUAUUUAUGCCUUUGC-----CC----------------------AAAUGUAUUAGCAUAC
((((((.....(((((...(((((((....)))))))..)))))...))).)))..........(((((...(((-----..----------------------....)))...))))). ( -24.10)
>DroEre_CAF1 68322 93 - 1
GCGGCAUGUUUGUGCGGACUAUUUAACAAAUUGAGUAUACGCACUGUUGCACGCGUAAAAUAUUUAUGCCUCUGC-----CC----------------------AAAUGUAUUAGCAUAC
((((((.....(((((...(((((((....)))))))..)))))...))).)))..........(((((...(((-----..----------------------....)))...))))). ( -23.40)
>DroWil_CAF1 73637 120 - 1
GUGGCAUGUUUGUGCGGACUAUUAAGCAAAUUACGUAUACGCACUGUUGCUCGCGUAAAAUAUUUAUGCAUGUUUUAUAGGCAAAUGGAAAUACAUAGACAUUUACAUAUAUUACCAAAU
((((.(((((((((....((((.(((((............(((....)))..((((((.....)))))).))))).))))....((....)).))))))))))))).............. ( -23.20)
>DroYak_CAF1 67913 93 - 1
CCGGCAUGUUUGUGCGGACUAUUUAACAAAUUGAGUAUACGCACUGUUGCACGCGUGAAAUAUUUAUGCCUCUGC-----CC----------------------AAAUGUAUUAGCAUAC
..(((((((..(((((...(((((((....)))))))..)))))....))).((((((.....))))))...)))-----).----------------------..((((....)))).. ( -22.70)
>consensus
GCGGCAUGUUUGUGCGGACUAUUUAACAAAUUGAGUAUACGCACUGUUGCACGCGUAAAAUAUUUAUGCCUGUGC_____CC______________________AAAUGUAUUAGCAUAC
((((((.....(((((...(((((((....)))))))..)))))))))))..((((((.....))))))................................................... (-18.60 = -18.68 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:18 2006