Locus 8385

Sequence ID 3R_DroMel_CAF1
Location 22,357,416 – 22,357,521
Length 105
Max. P 0.996555
window13508

overview

Window 8

Location 22,357,416 – 22,357,521
Length 105
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 95.70
Mean single sequence MFE -30.60
Consensus MFE -27.62
Energy contribution -27.62
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.04
Structure conservation index 0.90
SVM decision value 2.71
SVM RNA-class probability 0.996555
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22357416 105 - 27905053
-----AACUCCAGGCAAUAAUCAUAAACUAAUGGCGUAACAUGGCAGGCGUGUCCGCAUUCCACUCGAAAGGUCUUUCAAGUCUCUCAGCGUGGAGCGUGGAGAAAAAAA
-----..(((((.((..................(((..(((((.....))))).)))..(((((.(((.(((.((....))))).)).).))))))).)))))....... ( -29.20)
>DroSec_CAF1 65077 104 - 1
-----AACUCCAGGCAAUAAUCAUAAACUAAUGGCGUAACAUGGCAGGCGUGUCCGCAUUCCACUCGAAAGGUCUUUCAAGUCUCUCAGCGUGGAGCGUGGAGAAAA-AA
-----..(((((.((..................(((..(((((.....))))).)))..(((((.(((.(((.((....))))).)).).))))))).)))))....-.. ( -29.20)
>DroSim_CAF1 64202 110 - 1
CACAAAACUCCAGGCAAUAAUCAUAAACUAAUGGCGUAACAUGGCAGGCGUGUCCGCAUUCCACUCGAAAGGUCUUUCAAGUCUCUCAGCGUGGAGCGUGGAGAAAAAAA
.......(((((.((..................(((..(((((.....))))).)))..(((((.(((.(((.((....))))).)).).))))))).)))))....... ( -29.20)
>DroEre_CAF1 67447 105 - 1
-----AACUCCAGGCAAUAAUCAUAAACUAAUGGCGUAACAUGGCAGGCGUGUCCGCAUUCCACUCGAAAGGUCUUGUAAGACUCUCAGCGUGGAGCGUGGAGAAAAAAA
-----..(((((.((..................(((..(((((.....))))).)))..(((((.(..(..((((....))))..)..).))))))).)))))....... ( -32.40)
>DroYak_CAF1 67036 105 - 1
-----AACUCCAGGCAAUAAUCAUAAACUAAUGGCGUAACAUGGCAGGCGUGUCCGCAUUCCACUCGAAAGGUCUUUCAAGACACUCAGCGUGGAGCGUGGAGUAAAAAA
-----.((((((.((..................(((..(((((.....))))).)))..(((((.(...((((((....)))).))..).))))))).))))))...... ( -33.00)
>consensus
_____AACUCCAGGCAAUAAUCAUAAACUAAUGGCGUAACAUGGCAGGCGUGUCCGCAUUCCACUCGAAAGGUCUUUCAAGUCUCUCAGCGUGGAGCGUGGAGAAAAAAA
.......(((((.((..................(((..(((((.....))))).)))..(((((.(..(..(.((....)).)..)..).))))))).)))))....... (-27.62 = -27.62 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:16 2006