Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,355,433 – 22,355,569 |
Length | 136 |
Max. P | 0.999819 |
Location | 22,355,433 – 22,355,539 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 89.53 |
Mean single sequence MFE | -36.88 |
Consensus MFE | -29.50 |
Energy contribution | -28.86 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.12 |
Mean z-score | -1.80 |
Structure conservation index | 0.80 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862602 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22355433 106 + 27905053 UGUUGCUUUUGUUGUUGUUGCCGAUGUUGG-----UGUAGCUGGCAUUGCAGGCGGUGGGCGCUAGAUGGCGCCACACGCCGGCGAAAAUUGAAUAAGAGGCUCGAGUUGA .....(((((((((((.((((((((((..(-----.....)..)))))...((((...((((((....))))))...))))))))).)))..))))))))........... ( -41.60) >DroSec_CAF1 63103 95 + 1 UGUUGCUUUUGUUGCUG---------UUGG-----UGUAGCUGGC--UGCGAGCGGUGGGCGCUAGAUGGCGCCACACGCCGGCGAAAAUUGAAUAAGAGGCUCGAGUUGA ....((((..((..((.---------(..(-----(...((((((--((....))(((((((((....)))))).)))))))))....))..)...))..))..))))... ( -34.70) >DroSim_CAF1 62236 97 + 1 UGUUGCUUUUGUUGCUG---------UUGG-----UGUAGCUGGCAUUGCGAGCGGUGGGCGCUAGAUGGCGCCACACGCCGGCGAAAAUUGAAUAAGAGGCUCGAGUUGA ....((((..((..((.---------(..(-----(...((((((..((....))(((((((((....)))))).)))))))))....))..)...))..))..))))... ( -35.30) >DroEre_CAF1 65381 100 + 1 UGUUGCUUUUGUUGUUGCUG------UUGA-----UGUAGCUGGCAGUGCAGGCGGUGGGCGCUAGAUGGCGCCACACGCCGGCGAAAAUUGAAUAAGAGGCUCGACUUGA .((((((((((((...((((------((..-----.......))))))((.((((...((((((....))))))...)))).))........))))))))...)))).... ( -35.00) >DroYak_CAF1 64872 105 + 1 UGUUGCCUUUGUUGUUGCUG------UUGUUGAUGUGUAGCUGGCAGUGCAGGCGGUGGGCGCUAGAUGGCGCCACACGCCGGCGAAAAUUGAAUAAGAGGCUCGAGUUGA ....((((((......((((------((((((.....)))).))))))((.((((...((((((....))))))...)))).))............))))))......... ( -37.80) >consensus UGUUGCUUUUGUUGUUG_UG______UUGG_____UGUAGCUGGCAGUGCAGGCGGUGGGCGCUAGAUGGCGCCACACGCCGGCGAAAAUUGAAUAAGAGGCUCGAGUUGA ....((((((.((((((......................(((.((...)).))).(((((((((....)))))).)))..))))))..........))))))......... (-29.50 = -28.86 + -0.64)
Location | 22,355,433 – 22,355,539 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 89.53 |
Mean single sequence MFE | -26.24 |
Consensus MFE | -22.02 |
Energy contribution | -21.62 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.12 |
Mean z-score | -2.42 |
Structure conservation index | 0.84 |
SVM decision value | 2.52 |
SVM RNA-class probability | 0.994873 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22355433 106 - 27905053 UCAACUCGAGCCUCUUAUUCAAUUUUCGCCGGCGUGUGGCGCCAUCUAGCGCCCACCGCCUGCAAUGCCAGCUACA-----CCAACAUCGGCAACAACAACAAAAGCAACA .........((................((.((((((.(((((......))))))).)))).))..((((.......-----........))))............)).... ( -27.86) >DroSec_CAF1 63103 95 - 1 UCAACUCGAGCCUCUUAUUCAAUUUUCGCCGGCGUGUGGCGCCAUCUAGCGCCCACCGCUCGCA--GCCAGCUACA-----CCAA---------CAGCAACAAAAGCAACA .........((................((.((((((.(((((......))))))).)))).)).--....(((...-----....---------.))).......)).... ( -24.10) >DroSim_CAF1 62236 97 - 1 UCAACUCGAGCCUCUUAUUCAAUUUUCGCCGGCGUGUGGCGCCAUCUAGCGCCCACCGCUCGCAAUGCCAGCUACA-----CCAA---------CAGCAACAAAAGCAACA .........((................((.((((((.(((((......))))))).)))).)).......(((...-----....---------.))).......)).... ( -24.10) >DroEre_CAF1 65381 100 - 1 UCAAGUCGAGCCUCUUAUUCAAUUUUCGCCGGCGUGUGGCGCCAUCUAGCGCCCACCGCCUGCACUGCCAGCUACA-----UCAA------CAGCAACAACAAAAGCAACA .........((................((.((((((.(((((......))))))).)))).)).......(((...-----....------.)))..........)).... ( -26.00) >DroYak_CAF1 64872 105 - 1 UCAACUCGAGCCUCUUAUUCAAUUUUCGCCGGCGUGUGGCGCCAUCUAGCGCCCACCGCCUGCACUGCCAGCUACACAUCAACAA------CAGCAACAACAAAGGCAACA .........((((..............((.((((((.(((((......))))))).)))).)).......(((............------.)))........)))).... ( -29.12) >consensus UCAACUCGAGCCUCUUAUUCAAUUUUCGCCGGCGUGUGGCGCCAUCUAGCGCCCACCGCCUGCAAUGCCAGCUACA_____CCAA______CA_CAACAACAAAAGCAACA ...........................((.((((((.(((((......))))))).)))).)).......(((...............................))).... (-22.02 = -21.62 + -0.40)
Location | 22,355,465 – 22,355,569 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 97.31 |
Mean single sequence MFE | -38.96 |
Consensus MFE | -36.62 |
Energy contribution | -36.62 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.94 |
SVM decision value | 2.82 |
SVM RNA-class probability | 0.997205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22355465 104 + 27905053 UAGCUGGCAUUGCAGGCGGUGGGCGCUAGAUGGCGCCACACGCCGGCGAAAAUUGAAUAAGAGGCUCGAGUUGAAGGCAAUUGCCGAAGUAGGCAGGCAAGCGG ..(((.((.((((.((((...((((((....))))))...)))).))))..............((.(........)))..(((((......))))))).))).. ( -39.50) >DroSec_CAF1 63126 102 + 1 UAGCUGGC--UGCGAGCGGUGGGCGCUAGAUGGCGCCACACGCCGGCGAAAAUUGAAUAAGAGGCUCGAGUUGAAGGCAAUUGCCGAAGUAGGCAGGCAAGCGG ..((((.(--(((((((.(((((((((....)))))).)))(....)................))))........(((....))).......)))).).))).. ( -38.10) >DroSim_CAF1 62259 104 + 1 UAGCUGGCAUUGCGAGCGGUGGGCGCUAGAUGGCGCCACACGCCGGCGAAAAUUGAAUAAGAGGCUCGAGUUGAAGGCAAUUGCCGAAGUAGGCAGGCAAGCGG ......((.((((.....(((((((((....)))))).)))(((..(((...((((.........)))).)))..)))..(((((......))))))))))).. ( -37.50) >DroEre_CAF1 65407 104 + 1 UAGCUGGCAGUGCAGGCGGUGGGCGCUAGAUGGCGCCACACGCCGGCGAAAAUUGAAUAAGAGGCUCGACUUGAAGGCAAUUGCCGAAGUAGGCAGGCAAGCGG ..(((.((..(((.((((...((((((....))))))...))))(((((...(((.....(((......))).....)))))))).......))).)).))).. ( -41.00) >DroYak_CAF1 64903 104 + 1 UAGCUGGCAGUGCAGGCGGUGGGCGCUAGAUGGCGCCACACGCCGGCGAAAAUUGAAUAAGAGGCUCGAGUUGAAGGCAAUUGCCGAAGUAGGCAGGCAAGCGG ..(((.((..(((.(((((((((((((....)))))).)))(((..(((...((((.........)))).)))..)))...)))).......))).)).))).. ( -38.70) >consensus UAGCUGGCAGUGCAGGCGGUGGGCGCUAGAUGGCGCCACACGCCGGCGAAAAUUGAAUAAGAGGCUCGAGUUGAAGGCAAUUGCCGAAGUAGGCAGGCAAGCGG ..(((.((..........(((((((((....)))))).)))(((..(((...((((.........)))).)))..)))..(((((......))))))).))).. (-36.62 = -36.62 + 0.00)
Location | 22,355,465 – 22,355,569 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 97.31 |
Mean single sequence MFE | -32.81 |
Consensus MFE | -32.38 |
Energy contribution | -32.14 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.39 |
Structure conservation index | 0.99 |
SVM decision value | 4.16 |
SVM RNA-class probability | 0.999819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22355465 104 - 27905053 CCGCUUGCCUGCCUACUUCGGCAAUUGCCUUCAACUCGAGCCUCUUAUUCAAUUUUCGCCGGCGUGUGGCGCCAUCUAGCGCCCACCGCCUGCAAUGCCAGCUA ..(((.((.((((......))))..................................((.((((((.(((((......))))))).)))).))...)).))).. ( -32.90) >DroSec_CAF1 63126 102 - 1 CCGCUUGCCUGCCUACUUCGGCAAUUGCCUUCAACUCGAGCCUCUUAUUCAAUUUUCGCCGGCGUGUGGCGCCAUCUAGCGCCCACCGCUCGCA--GCCAGCUA ..(((.((.(((.......(((....)))........((((................(....)(((.(((((......)))))))).)))))))--)).))).. ( -32.20) >DroSim_CAF1 62259 104 - 1 CCGCUUGCCUGCCUACUUCGGCAAUUGCCUUCAACUCGAGCCUCUUAUUCAAUUUUCGCCGGCGUGUGGCGCCAUCUAGCGCCCACCGCUCGCAAUGCCAGCUA ..(((.((.((((......))))(((((...........(((..................)))(((.(((((......)))))))).....))))))).))).. ( -31.07) >DroEre_CAF1 65407 104 - 1 CCGCUUGCCUGCCUACUUCGGCAAUUGCCUUCAAGUCGAGCCUCUUAUUCAAUUUUCGCCGGCGUGUGGCGCCAUCUAGCGCCCACCGCCUGCACUGCCAGCUA ..(((.((..(((.((((.(((....)))...)))).).))................((.((((((.(((((......))))))).)))).))...)).))).. ( -35.00) >DroYak_CAF1 64903 104 - 1 CCGCUUGCCUGCCUACUUCGGCAAUUGCCUUCAACUCGAGCCUCUUAUUCAAUUUUCGCCGGCGUGUGGCGCCAUCUAGCGCCCACCGCCUGCACUGCCAGCUA ..(((.((.((((......))))..................................((.((((((.(((((......))))))).)))).))...)).))).. ( -32.90) >consensus CCGCUUGCCUGCCUACUUCGGCAAUUGCCUUCAACUCGAGCCUCUUAUUCAAUUUUCGCCGGCGUGUGGCGCCAUCUAGCGCCCACCGCCUGCAAUGCCAGCUA ..(((.((.((((......))))..................................((.((((((.(((((......))))))).)))).))...)).))).. (-32.38 = -32.14 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:13 2006