Locus 8382

Sequence ID 3R_DroMel_CAF1
Location 22,354,129 – 22,354,236
Length 107
Max. P 0.634029
window13501

overview

Window 1

Location 22,354,129 – 22,354,236
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 92.71
Mean single sequence MFE -31.28
Consensus MFE -25.76
Energy contribution -24.80
Covariance contribution -0.96
Combinations/Pair 1.23
Mean z-score -1.39
Structure conservation index 0.82
SVM decision value 0.21
SVM RNA-class probability 0.634029
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22354129 107 + 27905053
UGUGGCAUUUAUUUGGCAUUACUACGCUUUUCUGGUAGUGUAGGACUUUGUGCUUGUUUUGGUGCCGCUUUUCGGGGCUUAAAAGGCGGAGCUGGAGUGGAAGUCUG
.(((.((......)).)))..(((((((........)))))))(((((.....(..(((..((.((((((((..(...)..)))))))).))..)))..)))))).. ( -32.80)
>DroSec_CAF1 61863 107 + 1
UGUGGAAUUUAUUUGGCAUUACUACGCUUUUCUGGUAGUGUAGGACUUUGUGCUUGUUUUGGUGCCGCUUUUCGGGGCUUAAAAGGCGGAGCUGGAGUGGAAGUCUG
(((.(((....))).)))...(((((((........)))))))(((((.....(..(((..((.((((((((..(...)..)))))))).))..)))..)))))).. ( -31.60)
>DroSim_CAF1 61011 107 + 1
UGUGGCAUUUAUUUUGCAUUACUACGCUUUUCUGGUAGUGUAGGACUUUGUGCUUGUUUUGGUGCCGCUUUUCGGGGCUUAAAAGGCGGAGCUGGAGUGGAAGUCUG
....((((...(((((((((((((........)))))))))))))....))))(..(((..((.((((((((..(...)..)))))))).))..)))..)....... ( -33.50)
>DroEre_CAF1 64201 107 + 1
UGUGGCAUUUAGUUGGCCAUAAUACAUUUUUCUGAUAGUGUAGGACUUUGUGCUUGUGUCGGUGGCGCUUUUCGGGGCUUAAAAGGCGGAGCUGGAGUGGAAGUCUG
((((((.........)))))).((((((........))))))(((((((.(((((....((((..(((((((..(...)..)))))))..)))))))))))))))). ( -29.50)
>DroYak_CAF1 63685 107 + 1
UGUGUCAUUUAGUUGGCAUUACUACACUUUUCUGGUAGUGUAGGAUUUUGUACUUGUGUCGGUGGCGCUUUUCGGGGCUUAAAAGGCGUAGUUGGAGUGGAAGUCUG
.((((((......))))))..(((((((........)))))))((((((.(((((....(((..((((((((..(...)..))))))))..)))))))))))))).. ( -29.00)
>consensus
UGUGGCAUUUAUUUGGCAUUACUACGCUUUUCUGGUAGUGUAGGACUUUGUGCUUGUUUUGGUGCCGCUUUUCGGGGCUUAAAAGGCGGAGCUGGAGUGGAAGUCUG
.....................(((((((........)))))))((((((.(((((....((((.((((((((..(...)..)))))))).))))))))))))))).. (-25.76 = -24.80 +  -0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:09 2006