Locus 8381

Sequence ID 3R_DroMel_CAF1
Location 22,352,736 – 22,352,852
Length 116
Max. P 0.995076
window13500

overview

Window 0

Location 22,352,736 – 22,352,852
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.06
Mean single sequence MFE -30.20
Consensus MFE -26.46
Energy contribution -27.06
Covariance contribution 0.60
Combinations/Pair 1.09
Mean z-score -2.07
Structure conservation index 0.88
SVM decision value 2.54
SVM RNA-class probability 0.995076
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22352736 116 - 27905053
AAGUUU----UUUGUUUACUACUUCAUCAUGUUGACAAUGUGGAAAUUAAGUUGUUUAGAAAACGCUUUUCUGGCACACCAGACGAGCGGACGACUUAAAGGUGCCCAUUUAAUAUGAAC
......----................(((((((((..(((.((...((((((((((.......(((((.(((((....))))).))))))))))))))).....)))))))))))))).. ( -32.51)
>DroSec_CAF1 60480 119 - 1
AAGUUUU-UUUUUGUUUACUACUUCAUCGUGUUGACAUUGUGGAAAUUAAGUUGUUUAGAAAACGCUUUUCUGGCACACCAGACGAGCAGACGUCUUAAAGGUGGCCAUUUAAUACGAAC
.......-..................(((((((((......(((((....(((........)))...)))))(((.(((((((((......)))))....)))))))..))))))))).. ( -29.00)
>DroSim_CAF1 59625 120 - 1
AAGUUUUUUUUUUGUUUACUACUUCAUCGUGUUGACAAUGUGGAAAUUAAGUUGUUUAGAAAACUCUUUUCUGGCACACCAGACGAGCAGACGUCUUAAAGGUGCCCAUUUAAUACGAAC
..........................(((((((((..(((.(((((...((((........))))..)))))(((((...(((((......))))).....))))))))))))))))).. ( -27.30)
>DroEre_CAF1 62775 115 - 1
AAGUUU-----UUGUUUACUACUUCAUCGUGUUGACAAUCUAGAAAUUAAGUUGUUUAGGAAACGUUUUUCUGGCACACCAGACGAUCAGACGACUUAAAGGUGCCCAUUUAAUACGAAC
......-----...............(((((((((...........(((((((((((.(....)(.((.(((((....))))).)).)))))))))))).((...))..))))))))).. ( -26.70)
>DroYak_CAF1 62199 115 - 1
AAGUUU-----UUGUUUACUACAUCAUCGUGUUGACAAUGUGGAAAUUAAGUUGUUUAGGAAACGUUUUUCUGGCCCACCAGACGAGCAGACGACUUAAGGGUGCCCAUUUAAUACGAAC
......-----...............(((((((((..(((.((...(((((((((((.(....)((((.(((((....))))).))))))))))))))).....)))))))))))))).. ( -35.50)
>consensus
AAGUUU____UUUGUUUACUACUUCAUCGUGUUGACAAUGUGGAAAUUAAGUUGUUUAGAAAACGCUUUUCUGGCACACCAGACGAGCAGACGACUUAAAGGUGCCCAUUUAAUACGAAC
..........................(((((((((....((((.(.(((((((((((.(....)((((.(((((....))))).)))))))))))))))...)..))))))))))))).. (-26.46 = -27.06 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:08 2006