Locus 8380

Sequence ID 3R_DroMel_CAF1
Location 22,352,568 – 22,352,658
Length 90
Max. P 0.699036
window13499

overview

Window 9

Location 22,352,568 – 22,352,658
Length 90
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 92.66
Mean single sequence MFE -23.20
Consensus MFE -19.70
Energy contribution -19.82
Covariance contribution 0.12
Combinations/Pair 1.11
Mean z-score -1.36
Structure conservation index 0.85
SVM decision value 0.35
SVM RNA-class probability 0.699036
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22352568 90 + 27905053
AAUUCGCAGCUUGGCCG-GGGUCCCCGGAACC-----AAAAGCCUUAAUAUGCUUAUGUGCCGAGCAAGCGGAAAAGUACCAAGAGCAGAAAUCAC
..(((((.(((((((((-((...))))....(-----(.((((........)))).)).)))))))..)))))....................... ( -25.70)
>DroSec_CAF1 60305 95 + 1
AAUUCGCAGUUUGGCCG-GGGUACCCAGAACCAGAGAAAAAGCCUUAAUAUGCUUAUGUGCCGAGCAAGCGAAAAAGUACCAAGAGCAGAAAUCAC
..(((((.(((((((((-((...))).............((((........))))..).)))))))..)))))....................... ( -21.40)
>DroSim_CAF1 59454 91 + 1
AAUUCGCAGUUUGGCCG-GGGUACCCAGAACCC----AAAAGCCUUAAUAUGCUUAUGUGCCGAGCAAGCGGAAAAGUACCAAGAGCAGAAAUCAC
..(((((.(((((((((-((((.......))))----..((((........)))).)).)))))))..)))))....................... ( -23.40)
>DroEre_CAF1 62607 90 + 1
AAAUCGCAGUUUGGCUG-GGGUUCCCAGAACC-----AAAAGCCUUAAUAUGCUUAUGUGCCGAGCAAGCGUAAAAGUACCAAGAGCGAAAAUCAC
...((((.....((((.-.(((((...)))))-----...))))....((((((..(((.....)))))))))............))))....... ( -24.60)
>DroYak_CAF1 62030 91 + 1
AAUUCGCAGUUUGGCCGAGGGUCCCCAGAACC-----AAAAGCCUUAAUAUGCUUAUGUGCCGAGCAAGCGGAAAAGUACCAAGAGCAAAAAUCAC
..(((((.(((((((...((....)).....(-----(.((((........)))).)).)))))))..)))))....................... ( -20.90)
>consensus
AAUUCGCAGUUUGGCCG_GGGUACCCAGAACC_____AAAAGCCUUAAUAUGCUUAUGUGCCGAGCAAGCGGAAAAGUACCAAGAGCAGAAAUCAC
..(((((.(((((((...((....)).............((((........))))....)))))))..)))))....................... (-19.70 = -19.82 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:07 2006