| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,350,434 – 22,350,542 |
| Length | 108 |
| Max. P | 0.528293 |
| Location | 22,350,434 – 22,350,542 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.21 |
| Mean single sequence MFE | -16.63 |
| Consensus MFE | -5.80 |
| Energy contribution | -5.64 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.35 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22350434 108 + 27905053 CAUUGGCUAGUCCCAG-------UCCUCCUAUUCAUCCUGACCAUUUUACACUGAGCCAAUAACCAAUAGGAGUAUCAUAUUCUGUAGAUACAUAUCUUUA--GAAUAUUUUA--AA-AC .(((((......))))-------).((((((((.....((.(((........)).).))......))))))))((..((((((((.((((....)))).))--))))))..))--..-.. ( -19.00) >DroSec_CAF1 58201 107 + 1 CAUUGGCUAGUCCCAAUUCUCCUACCUUCUAUUCAUCCUGACCAUUUUACACUGAGCCAAUAACCAAUACGAAACUCACAUUCUGUAGAUACU--UUUAUA--GCUUUUUU--------- .((((((((((.......................................))).))))))).....................(((((((....--))))))--).......--------- ( -11.03) >DroSim_CAF1 57300 108 + 1 CAUUGGCUAGUCCCAG-------ACCAUCUAUUCAUCCUGACCAUUUUACACUGAGCCAAUAACCAAUACGAAACUCACAUUCUGUAGAUACAGAUCUAUA--GAAUAUUUUA--AA-AC .((((((((((.....-------....((..........)).........))).)))))))..................(((((((((((....)))))))--))))......--..-.. ( -19.87) >DroEre_CAF1 60399 108 + 1 CAUUGGUUAG--CCAG-------UCC-CCUAUUUCUCCUGGCCAUUUUACACUGAGCCAAUAUGCAAUGCAAACAUCGCAUUCUAUAGAUACAGAUCUUGUAUG--UAUUUCACGAAUAU .(((((((.(--((((-------...-..........)))))((........)))))))))..((.(((....))).))((((...(((((((.........))--)))))...)))).. ( -19.52) >DroYak_CAF1 59866 109 + 1 CAUUGGCUAG--CCAG-------UCCUCCUAUUUCUCCUGACCAGUUUACACUGAGCCAAUAAACAAUACAAGAAUCACAUUCUACAGAUCCAUAUCUUUCAUGAUUAUUUCA--ACUAU .(((((((..--.(((-------..............)))..((((....)))))))))))..........(((((...)))))...((.....(((......)))....)).--..... ( -13.74) >consensus CAUUGGCUAGUCCCAG_______UCCUCCUAUUCAUCCUGACCAUUUUACACUGAGCCAAUAACCAAUACGAAAAUCACAUUCUGUAGAUACAGAUCUUUA__GAAUAUUUCA__AA_AC .(((((((((.........................................)).)))))))........................................................... ( -5.80 = -5.64 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:06 2006