Locus 8378

Sequence ID 3R_DroMel_CAF1
Location 22,349,918 – 22,350,010
Length 92
Max. P 0.920425
window13497

overview

Window 7

Location 22,349,918 – 22,350,010
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 96.45
Mean single sequence MFE -17.35
Consensus MFE -15.22
Energy contribution -15.50
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -1.81
Structure conservation index 0.88
SVM decision value 1.13
SVM RNA-class probability 0.920425
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22349918 92 + 27905053
CAAAAUGGGACACUCCAUUUUCGUCAAUUGAUUCGCCUGUCUGGCUCUUUCAAAUACGCAUUAAUUUCAUUUAUUGCAAUCAUCAUUGUUGU
.((((((((....))))))))((.(((((((((.(((.....)))............(((.(((......))).))))))))..)))).)). ( -17.40)
>DroSec_CAF1 57691 92 + 1
CAAAAUGGGACACUCCAUUUUCGUCAAUUGAUUCGCCUGUCUGGCUCUUUCAAAUACGCAUUAAUUUCAUUUAUUGCAAUCAUCAUUGUUGU
.((((((((....))))))))((.(((((((((.(((.....)))............(((.(((......))).))))))))..)))).)). ( -17.40)
>DroSim_CAF1 56791 92 + 1
CAAAAUGGGACACUCCAUUUUCGUCAAUUGAUUCGCCUGUCUGGCUCUUUCAAAUACGCAUUAAUUUCAUUUAUUGCAAUCAUCAUUGUUGU
.((((((((....))))))))((.(((((((((.(((.....)))............(((.(((......))).))))))))..)))).)). ( -17.40)
>DroEre_CAF1 59908 92 + 1
CCAAAUGGGACACUCCAUUUUCGUCAAUUGAUUCGCCUGUCUGGCUCUCUCAAAUACGCAUUAAUUUCAUUUAUUGCAAUCAUCAUUGUUGU
..(((((((....))))))).((.(((((((((.(((.....)))............(((.(((......))).))))))))..)))).)). ( -16.50)
>DroYak_CAF1 59354 92 + 1
CAAAAUGGGACACUCCAUUUUCGUCAAUUGAUUCGCCUGUCUGGCUCUUUCAAAUACGCAUUAAUUUCAUUUAUUGCAAUCAUCAUUGUUGU
.((((((((....))))))))((.(((((((((.(((.....)))............(((.(((......))).))))))))..)))).)). ( -17.40)
>DroMoj_CAF1 61320 91 + 1
CG-AAUGCGGCACUCCAUUUUUGUCAAUUGAUUCGCCUGUCUGGGUCUUUCAAAUACGCAUUAAUUUCAUUUAUUGCAAUCAUCAUUGUCGC
..-...((((((...............((((...((((....))))...))))....(((.(((......))).))).........)))))) ( -18.00)
>consensus
CAAAAUGGGACACUCCAUUUUCGUCAAUUGAUUCGCCUGUCUGGCUCUUUCAAAUACGCAUUAAUUUCAUUUAUUGCAAUCAUCAUUGUUGU
.((((((((....))))))))((.(((((((((.(((.....)))............(((.(((......))).))))))))..)))).)). (-15.22 = -15.50 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:05 2006