| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,345,926 – 22,346,019 |
| Length | 93 |
| Max. P | 0.758744 |
| Location | 22,345,926 – 22,346,019 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.48 |
| Mean single sequence MFE | -21.78 |
| Consensus MFE | -13.65 |
| Energy contribution | -13.93 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.758744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22345926 93 + 27905053 ----------------GGA------UGUGUUGUUGUCAG-----UUCUCCCCGAGGGCAAUAUGACAAUUAGUUACCAAAGCAACAACAGAAAUACCUACAAAUGACAGCAAAAUACACA ----------------...------((((((((((((((-----(((((...))))))....((((.....))))............................))))))))....))))) ( -19.70) >DroPse_CAF1 51377 95 + 1 ----------------CAC------UGUGUUGCUGUCAGUG---UCCUCUCCGGGGGCAAUAUGACAAUUAGUUACCAAAGCAACAACAGAAAUACCUACAAAUGACAGCAAAAUACACA ----------------...------.((((((((((((.((---((((.....))))))...((((.....))))............................))))))))....)))). ( -24.80) >DroWil_CAF1 61019 94 + 1 -------------------------CGCGUUGCUGUCGUUGUCCCACUCCCCAAGGGCAAUAUGACAAUUAGUUACCAAAGCAACAACAGAAAUACCUACAAAUGACAGCAA-AUACACC -------------------------....(((((((((((((((..........))))))).((((.....)))).............................))))))))-....... ( -20.20) >DroYak_CAF1 55270 93 + 1 ----------------GAA------UGUGUUGUUGUCAG-----UUCUCCCCGAGGGCAAUAUGACAAUUAGUUACCAAAGCAACAACAGAAAUACCUACAAAUGACAGCAAAAUACAUA ----------------..(------((((((((((((((-----(((((...))))))....((((.....))))............................))))))))..)))))). ( -20.40) >DroMoj_CAF1 57212 114 + 1 UUGGAGGGAUGUGUAGGGAUGUGUUUGUGUCGCUUUCAG-----CACUCUCUGGGGGCAAUACGACAAUUAGUUACCAAAGCAACAACAGAAAUACCUACAAAUGACAGCAA-AUACACU (((..(..((.((((((....((((.((((.(((..(((-----......)))..))).))))))))....(((.....))).............)))))).))..)..)))-....... ( -25.80) >DroAna_CAF1 57000 93 + 1 ----------------GGC------UGUGCGGCUGUCAU-----UCCUCCCGGGGGGCAAUAUGACAAUUAGUUACCAAAGCAACAACAGAAAUACCUACAAAUGACAGCAAAAUACACA ----------------...------((((..((((((((-----(((((....)))).....((((.....))))..........................)))))))))....)))).. ( -19.80) >consensus ________________GGA______UGUGUUGCUGUCAG_____UACUCCCCGAGGGCAAUAUGACAAUUAGUUACCAAAGCAACAACAGAAAUACCUACAAAUGACAGCAAAAUACACA ..........................((((((((((((..........((....))((....((((.....)))).....)).....................))))))))....)))). (-13.65 = -13.93 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:02 2006